Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IUD20_RS08630 | Genome accession | NZ_CP064334 |
| Coordinates | 1886908..1887354 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1879555..1900705 | 1886908..1887354 | within | 0 |
Gene organization within MGE regions
Location: 1879555..1900705
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD20_RS08585 (IUD20_08585) | - | 1879555..1880070 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| IUD20_RS11855 | - | 1880067..1880303 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| IUD20_RS08595 (IUD20_08595) | - | 1880380..1882479 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| IUD20_RS08600 (IUD20_08600) | - | 1882476..1883084 (-) | 609 | WP_004088848.1 | hypothetical protein | - |
| IUD20_RS08605 (IUD20_08605) | - | 1883481..1884950 (-) | 1470 | WP_004088851.1 | VapE domain-containing protein | - |
| IUD20_RS08610 (IUD20_08610) | - | 1884947..1886002 (-) | 1056 | WP_004088854.1 | DNA primase | - |
| IUD20_RS08615 (IUD20_08615) | - | 1886001..1886402 (+) | 402 | WP_004088857.1 | hypothetical protein | - |
| IUD20_RS08620 (IUD20_08620) | - | 1886504..1886677 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| IUD20_RS08625 (IUD20_08625) | - | 1886652..1886924 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| IUD20_RS08630 (IUD20_08630) | ssb | 1886908..1887354 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| IUD20_RS08635 (IUD20_08635) | - | 1887373..1887648 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| IUD20_RS08640 (IUD20_08640) | - | 1887648..1888821 (+) | 1174 | Protein_1714 | integrase | - |
| IUD20_RS08645 (IUD20_08645) | - | 1889131..1889334 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| IUD20_RS08650 (IUD20_08650) | - | 1889401..1889808 (+) | 408 | WP_012382712.1 | hypothetical protein | - |
| IUD20_RS08655 (IUD20_08655) | - | 1889723..1890343 (+) | 621 | WP_161595265.1 | hypothetical protein | - |
| IUD20_RS08660 (IUD20_08660) | - | 1890288..1891742 (-) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| IUD20_RS08665 (IUD20_08665) | - | 1891739..1892428 (-) | 690 | WP_228446149.1 | restriction endonuclease | - |
| IUD20_RS08670 (IUD20_08670) | - | 1892503..1892712 (+) | 210 | WP_126709098.1 | hypothetical protein | - |
| IUD20_RS08680 (IUD20_08680) | - | 1892946..1893401 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| IUD20_RS08685 (IUD20_08685) | - | 1893398..1897963 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| IUD20_RS08690 (IUD20_08690) | - | 1897967..1898461 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| IUD20_RS08695 (IUD20_08695) | - | 1898461..1899717 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| IUD20_RS08700 (IUD20_08700) | pilV | 1899714..1900196 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| IUD20_RS08705 (IUD20_08705) | - | 1900193..1900705 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=500833 IUD20_RS08630 WP_004088866.1 1886908..1887354(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=500833 IUD20_RS08630 WP_004088866.1 1886908..1887354(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |