Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IUD21_RS08625 | Genome accession | NZ_CP064332 |
| Coordinates | 1887518..1887964 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Bakersfield-11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1880165..1901315 | 1887518..1887964 | within | 0 |
Gene organization within MGE regions
Location: 1880165..1901315
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD21_RS08580 (IUD21_08580) | - | 1880165..1880680 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| IUD21_RS11890 | - | 1880677..1880913 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| IUD21_RS08590 (IUD21_08590) | - | 1880990..1883089 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| IUD21_RS08595 (IUD21_08595) | - | 1883086..1883694 (-) | 609 | WP_004088848.1 | hypothetical protein | - |
| IUD21_RS08600 (IUD21_08600) | - | 1884091..1885560 (-) | 1470 | WP_004088851.1 | VapE domain-containing protein | - |
| IUD21_RS08605 (IUD21_08605) | - | 1885557..1886612 (-) | 1056 | WP_004088854.1 | DNA primase | - |
| IUD21_RS08610 (IUD21_08610) | - | 1886611..1887012 (+) | 402 | WP_004088857.1 | hypothetical protein | - |
| IUD21_RS08615 (IUD21_08615) | - | 1887114..1887287 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| IUD21_RS08620 (IUD21_08620) | - | 1887262..1887534 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| IUD21_RS08625 (IUD21_08625) | ssb | 1887518..1887964 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| IUD21_RS08630 (IUD21_08630) | - | 1887983..1888258 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| IUD21_RS08635 (IUD21_08635) | - | 1888258..1889431 (+) | 1174 | Protein_1712 | integrase | - |
| IUD21_RS08640 (IUD21_08640) | - | 1889741..1889944 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| IUD21_RS08645 (IUD21_08645) | - | 1890011..1890418 (+) | 408 | WP_012382712.1 | hypothetical protein | - |
| IUD21_RS11895 | - | 1890333..1890953 (+) | 621 | WP_161595265.1 | hypothetical protein | - |
| IUD21_RS08650 (IUD21_08650) | - | 1890898..1892352 (-) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| IUD21_RS08655 (IUD21_08655) | - | 1892349..1893038 (-) | 690 | WP_228446149.1 | restriction endonuclease | - |
| IUD21_RS08660 (IUD21_08660) | - | 1893113..1893322 (+) | 210 | WP_126709098.1 | hypothetical protein | - |
| IUD21_RS08670 (IUD21_08670) | - | 1893556..1894011 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| IUD21_RS08675 (IUD21_08675) | - | 1894008..1898573 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| IUD21_RS08680 (IUD21_08680) | - | 1898577..1899071 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| IUD21_RS08685 (IUD21_08685) | - | 1899071..1900327 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| IUD21_RS08690 (IUD21_08690) | pilV | 1900324..1900806 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| IUD21_RS08695 (IUD21_08695) | - | 1900803..1901315 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=500816 IUD21_RS08625 WP_004088866.1 1887518..1887964(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-11]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=500816 IUD21_RS08625 WP_004088866.1 1887518..1887964(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-11]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |