Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IUD22_RS08485 | Genome accession | NZ_CP064330 |
| Coordinates | 1870304..1870750 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Bakersfield-13 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1862951..1884101 | 1870304..1870750 | within | 0 |
Gene organization within MGE regions
Location: 1862951..1884101
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD22_RS08440 (IUD22_08440) | - | 1862951..1863466 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| IUD22_RS11780 | - | 1863463..1863699 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| IUD22_RS08450 (IUD22_08450) | - | 1863776..1865875 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| IUD22_RS08455 (IUD22_08455) | - | 1865872..1866612 (-) | 741 | WP_228446148.1 | hypothetical protein | - |
| IUD22_RS08460 (IUD22_08460) | - | 1866877..1868346 (-) | 1470 | WP_004088851.1 | VapE domain-containing protein | - |
| IUD22_RS08465 (IUD22_08465) | - | 1868343..1869398 (-) | 1056 | WP_004088854.1 | DNA primase | - |
| IUD22_RS08470 (IUD22_08470) | - | 1869397..1869798 (+) | 402 | WP_004088857.1 | hypothetical protein | - |
| IUD22_RS08475 (IUD22_08475) | - | 1869900..1870073 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| IUD22_RS08480 (IUD22_08480) | - | 1870048..1870320 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| IUD22_RS08485 (IUD22_08485) | ssb | 1870304..1870750 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| IUD22_RS08490 (IUD22_08490) | - | 1870769..1871044 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| IUD22_RS08495 (IUD22_08495) | - | 1871044..1872217 (+) | 1174 | Protein_1689 | integrase | - |
| IUD22_RS08500 (IUD22_08500) | - | 1872527..1872730 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| IUD22_RS08505 (IUD22_08505) | - | 1872797..1873204 (+) | 408 | WP_012382712.1 | hypothetical protein | - |
| IUD22_RS11975 | - | 1873405..1873530 (-) | 126 | WP_256626233.1 | hypothetical protein | - |
| IUD22_RS08510 (IUD22_08510) | - | 1873684..1875138 (-) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| IUD22_RS08515 (IUD22_08515) | - | 1875135..1875824 (-) | 690 | WP_228446149.1 | restriction endonuclease | - |
| IUD22_RS08520 (IUD22_08520) | - | 1875899..1876108 (+) | 210 | WP_126709098.1 | hypothetical protein | - |
| IUD22_RS08530 (IUD22_08530) | - | 1876342..1876797 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| IUD22_RS08535 (IUD22_08535) | - | 1876794..1881359 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| IUD22_RS08540 (IUD22_08540) | - | 1881363..1881857 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| IUD22_RS08545 (IUD22_08545) | - | 1881857..1883113 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| IUD22_RS08550 (IUD22_08550) | pilV | 1883110..1883592 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| IUD22_RS08555 (IUD22_08555) | - | 1883589..1884101 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=500799 IUD22_RS08485 WP_004088866.1 1870304..1870750(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-13]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=500799 IUD22_RS08485 WP_004088866.1 1870304..1870750(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-13]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |