Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IUD25_RS08490 | Genome accession | NZ_CP064328 |
| Coordinates | 1869970..1870416 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1862617..1883767 | 1869970..1870416 | within | 0 |
Gene organization within MGE regions
Location: 1862617..1883767
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD25_RS08445 (IUD25_08445) | - | 1862617..1863132 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| IUD25_RS11725 | - | 1863129..1863365 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| IUD25_RS08455 (IUD25_08455) | - | 1863442..1865541 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| IUD25_RS08460 (IUD25_08460) | - | 1865538..1866278 (-) | 741 | WP_228446148.1 | hypothetical protein | - |
| IUD25_RS08465 (IUD25_08465) | - | 1866543..1868012 (-) | 1470 | WP_004088851.1 | VapE domain-containing protein | - |
| IUD25_RS08470 (IUD25_08470) | - | 1868009..1869064 (-) | 1056 | WP_004088854.1 | DNA primase | - |
| IUD25_RS08475 (IUD25_08475) | - | 1869063..1869464 (+) | 402 | WP_004088857.1 | hypothetical protein | - |
| IUD25_RS08480 (IUD25_08480) | - | 1869566..1869739 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| IUD25_RS08485 (IUD25_08485) | - | 1869714..1869986 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| IUD25_RS08490 (IUD25_08490) | ssb | 1869970..1870416 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| IUD25_RS08495 (IUD25_08495) | - | 1870435..1870710 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| IUD25_RS08500 (IUD25_08500) | - | 1870710..1871883 (+) | 1174 | Protein_1684 | integrase | - |
| IUD25_RS08505 (IUD25_08505) | - | 1872193..1872396 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| IUD25_RS08510 (IUD25_08510) | - | 1872466..1872870 (+) | 405 | WP_228762613.1 | hypothetical protein | - |
| IUD25_RS11900 | - | 1873071..1873196 (-) | 126 | WP_256626233.1 | hypothetical protein | - |
| IUD25_RS08515 (IUD25_08515) | - | 1873350..1874804 (-) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| IUD25_RS08520 (IUD25_08520) | - | 1874801..1875490 (-) | 690 | WP_228446149.1 | restriction endonuclease | - |
| IUD25_RS08525 (IUD25_08525) | - | 1875565..1875774 (+) | 210 | WP_126709098.1 | hypothetical protein | - |
| IUD25_RS08535 (IUD25_08535) | - | 1876008..1876463 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| IUD25_RS08540 (IUD25_08540) | - | 1876460..1881025 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| IUD25_RS08545 (IUD25_08545) | - | 1881029..1881523 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| IUD25_RS08550 (IUD25_08550) | - | 1881523..1882779 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| IUD25_RS08555 (IUD25_08555) | pilV | 1882776..1883258 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| IUD25_RS08560 (IUD25_08560) | - | 1883255..1883767 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=500782 IUD25_RS08490 WP_004088866.1 1869970..1870416(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=500782 IUD25_RS08490 WP_004088866.1 1869970..1870416(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |