Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IUD19_RS03040 | Genome accession | NZ_CP064326 |
| Coordinates | 705977..706423 (-) | Length | 148 a.a. |
| NCBI ID | WP_021358633.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. multiplex strain Riv5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 696750..725367 | 705977..706423 | within | 0 |
Gene organization within MGE regions
Location: 696750..725367
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD19_RS02985 (IUD19_02985) | - | 696792..697376 (+) | 585 | WP_004083991.1 | alpha-ketoglutarate-dependent dioxygenase AlkB | - |
| IUD19_RS02990 (IUD19_02990) | - | 697571..698212 (-) | 642 | WP_004083987.1 | ABC-type transport auxiliary lipoprotein family protein | - |
| IUD19_RS02995 (IUD19_02995) | - | 698209..699135 (-) | 927 | WP_004083985.1 | MlaD family protein | - |
| IUD19_RS03000 (IUD19_03000) | - | 699139..699969 (-) | 831 | WP_004083974.1 | ABC transporter ATP-binding protein | - |
| IUD19_RS03005 (IUD19_03005) | - | 699975..701093 (-) | 1119 | WP_194957699.1 | ABC transporter permease | - |
| IUD19_RS03010 (IUD19_03010) | - | 701203..702465 (+) | 1263 | WP_012337721.1 | threonine/serine exporter family protein | - |
| IUD19_RS03015 (IUD19_03015) | - | 703106..703312 (+) | 207 | WP_071869858.1 | hypothetical protein | - |
| IUD19_RS03020 (IUD19_03020) | - | 703376..703588 (+) | 213 | WP_228304324.1 | hypothetical protein | - |
| IUD19_RS03025 (IUD19_03025) | - | 703652..703870 (+) | 219 | WP_228762572.1 | hypothetical protein | - |
| IUD19_RS03030 (IUD19_03030) | - | 704511..705683 (-) | 1173 | WP_004083967.1 | integrase | - |
| IUD19_RS03035 (IUD19_03035) | - | 705683..705955 (-) | 273 | WP_004083966.1 | hypothetical protein | - |
| IUD19_RS03040 (IUD19_03040) | ssb | 705977..706423 (-) | 447 | WP_021358633.1 | single-stranded DNA-binding protein | Machinery gene |
| IUD19_RS03045 (IUD19_03045) | - | 706407..706877 (-) | 471 | WP_076613218.1 | DUF5131 family protein | - |
| IUD19_RS03050 (IUD19_03050) | - | 706870..707100 (-) | 231 | WP_021358635.1 | hypothetical protein | - |
| IUD19_RS03055 (IUD19_03055) | - | 707100..707633 (-) | 534 | WP_004083962.1 | hypothetical protein | - |
| IUD19_RS03060 (IUD19_03060) | - | 707630..708223 (-) | 594 | WP_004083960.1 | DapH/DapD/GlmU-related protein | - |
| IUD19_RS03065 (IUD19_03065) | - | 708316..708849 (-) | 534 | WP_012337723.1 | pilin | - |
| IUD19_RS03070 (IUD19_03070) | - | 708982..709248 (-) | 267 | WP_194957700.1 | hypothetical protein | - |
| IUD19_RS03075 (IUD19_03075) | - | 709245..709523 (-) | 279 | WP_004083957.1 | hypothetical protein | - |
| IUD19_RS03080 (IUD19_03080) | - | 709520..709741 (-) | 222 | WP_021358638.1 | hypothetical protein | - |
| IUD19_RS03085 (IUD19_03085) | - | 709738..710196 (-) | 459 | WP_194957701.1 | hypothetical protein | - |
| IUD19_RS03090 (IUD19_03090) | - | 710193..710657 (-) | 465 | WP_021358639.1 | DUF1566 domain-containing protein | - |
| IUD19_RS11240 | - | 710654..710995 (-) | 342 | WP_228762220.1 | hypothetical protein | - |
| IUD19_RS03100 (IUD19_03100) | - | 711141..711764 (+) | 624 | WP_004083954.1 | hypothetical protein | - |
| IUD19_RS03105 (IUD19_03105) | - | 711866..712267 (-) | 402 | WP_194957702.1 | hypothetical protein | - |
| IUD19_RS03110 (IUD19_03110) | - | 712266..712754 (+) | 489 | WP_228762573.1 | CHC2 zinc finger domain-containing protein | - |
| IUD19_RS03115 (IUD19_03115) | - | 712690..713334 (+) | 645 | WP_228762222.1 | terminase gpA endonuclease subunit | - |
| IUD19_RS03120 (IUD19_03120) | - | 713411..713647 (+) | 237 | WP_012337727.1 | hypothetical protein | - |
| IUD19_RS03125 (IUD19_03125) | - | 713644..714159 (+) | 516 | WP_004083947.1 | phage portal protein | - |
| IUD19_RS11245 | - | 714324..714566 (+) | 243 | WP_228762223.1 | hypothetical protein | - |
| IUD19_RS11665 | - | 714580..714702 (+) | 123 | WP_324187556.1 | hypothetical protein | - |
| IUD19_RS03135 (IUD19_03135) | - | 714693..715121 (+) | 429 | WP_004086822.1 | hypothetical protein | - |
| IUD19_RS03140 (IUD19_03140) | - | 715118..715354 (+) | 237 | WP_004083943.1 | hypothetical protein | - |
| IUD19_RS03145 (IUD19_03145) | - | 715344..718169 (+) | 2826 | WP_169709956.1 | phage tail protein | - |
| IUD19_RS03150 (IUD19_03150) | - | 718162..718650 (+) | 489 | WP_228762574.1 | hypothetical protein | - |
| IUD19_RS03155 (IUD19_03155) | - | 718678..719097 (+) | 420 | WP_004083636.1 | hypothetical protein | - |
| IUD19_RS03160 (IUD19_03160) | - | 719173..719868 (+) | 696 | WP_194957703.1 | hypothetical protein | - |
| IUD19_RS11555 | - | 719928..720056 (-) | 129 | WP_256704593.1 | hypothetical protein | - |
| IUD19_RS03170 (IUD19_03170) | - | 720104..720211 (+) | 108 | Protein_613 | DNA adenine methylase | - |
| IUD19_RS03175 (IUD19_03175) | - | 720263..720890 (+) | 628 | Protein_614 | IS607 family transposase | - |
| IUD19_RS03180 (IUD19_03180) | - | 720884..722080 (+) | 1197 | WP_194957704.1 | RNA-guided endonuclease TnpB family protein | - |
| IUD19_RS03185 (IUD19_03185) | - | 722087..722791 (+) | 705 | WP_154123795.1 | DNA adenine methylase | - |
| IUD19_RS03190 (IUD19_03190) | - | 723496..723795 (-) | 300 | WP_004084250.1 | hypothetical protein | - |
| IUD19_RS11560 | - | 723929..724060 (-) | 132 | WP_256704532.1 | hypothetical protein | - |
| IUD19_RS03195 (IUD19_03195) | - | 724155..724397 (-) | 243 | WP_020851762.1 | hypothetical protein | - |
| IUD19_RS03200 (IUD19_03200) | - | 724803..725120 (-) | 318 | WP_004084245.1 | BrnA antitoxin family protein | - |
| IUD19_RS03205 (IUD19_03205) | - | 725080..725367 (-) | 288 | WP_004083921.1 | BrnT family toxin | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16536.38 Da Isoelectric Point: 6.4871
>NTDB_id=500759 IUD19_RS03040 WP_021358633.1 705977..706423(-) (ssb) [Xylella fastidiosa subsp. multiplex strain Riv5]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSGRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGQDGQERYVTEIIADQMHMLGGRGEGSSGITPQRQPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSGRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGQDGQERYVTEIIADQMHMLGGRGEGSSGITPQRQPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=500759 IUD19_RS03040 WP_021358633.1 705977..706423(-) (ssb) [Xylella fastidiosa subsp. multiplex strain Riv5]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGCAACCTGGGGAACGAACCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAGCATTAGCCTAGCGACCAGCAGCGGACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTTGGCGAGATTGCCGCCGAATATCTGCATAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAGTTCACCGGCCAGGACGGTCAGGAGCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGTGAAGGCTCCAGCGGTATCACGCCACAGCGGCAACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGCAACCTGGGGAACGAACCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAGCATTAGCCTAGCGACCAGCAGCGGACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTTGGCGAGATTGCCGCCGAATATCTGCATAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAGTTCACCGGCCAGGACGGTCAGGAGCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGTGAAGGCTCCAGCGGTATCACGCCACAGCGGCAACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
41.477 |
100 |
0.493 |
| ssb | Neisseria meningitidis MC58 |
38.728 |
100 |
0.453 |
| ssb | Neisseria gonorrhoeae MS11 |
38.728 |
100 |
0.453 |
| ssb | Glaesserella parasuis strain SC1401 |
41.304 |
93.243 |
0.385 |