Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IUD24_RS02925 | Genome accession | NZ_CP064325 |
| Coordinates | 693858..694304 (-) | Length | 148 a.a. |
| NCBI ID | WP_021358633.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. multiplex strain Red Oak | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 684916..713247 | 693858..694304 | within | 0 |
Gene organization within MGE regions
Location: 684916..713247
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD24_RS02875 (IUD24_02875) | - | 684958..685542 (+) | 585 | WP_004083991.1 | alpha-ketoglutarate-dependent dioxygenase AlkB | - |
| IUD24_RS02880 (IUD24_02880) | - | 685737..686378 (-) | 642 | WP_004083987.1 | ABC-type transport auxiliary lipoprotein family protein | - |
| IUD24_RS02885 (IUD24_02885) | - | 686375..687301 (-) | 927 | WP_004083985.1 | MlaD family protein | - |
| IUD24_RS02890 (IUD24_02890) | - | 687305..688135 (-) | 831 | WP_004083974.1 | ABC transporter ATP-binding protein | - |
| IUD24_RS02895 (IUD24_02895) | - | 688141..689259 (-) | 1119 | WP_004083972.1 | ABC transporter permease | - |
| IUD24_RS02900 (IUD24_02900) | - | 689369..690631 (+) | 1263 | WP_012337721.1 | threonine/serine exporter family protein | - |
| IUD24_RS02905 (IUD24_02905) | - | 691272..691478 (+) | 207 | WP_071869858.1 | hypothetical protein | - |
| IUD24_RS02910 (IUD24_02910) | - | 691542..691751 (+) | 210 | WP_225621843.1 | hypothetical protein | - |
| IUD24_RS02915 (IUD24_02915) | - | 692392..693564 (-) | 1173 | WP_004083967.1 | integrase | - |
| IUD24_RS02920 (IUD24_02920) | - | 693564..693836 (-) | 273 | WP_004083966.1 | hypothetical protein | - |
| IUD24_RS02925 (IUD24_02925) | ssb | 693858..694304 (-) | 447 | WP_021358633.1 | single-stranded DNA-binding protein | Machinery gene |
| IUD24_RS02930 (IUD24_02930) | - | 694288..694758 (-) | 471 | WP_076613218.1 | DUF5131 family protein | - |
| IUD24_RS02935 (IUD24_02935) | - | 694751..694981 (-) | 231 | WP_021358635.1 | hypothetical protein | - |
| IUD24_RS02940 (IUD24_02940) | - | 694981..695514 (-) | 534 | WP_004083962.1 | hypothetical protein | - |
| IUD24_RS02945 (IUD24_02945) | - | 695511..696104 (-) | 594 | WP_004083960.1 | DapH/DapD/GlmU-related protein | - |
| IUD24_RS02950 (IUD24_02950) | - | 696197..696730 (-) | 534 | WP_012337723.1 | pilin | - |
| IUD24_RS02955 (IUD24_02955) | - | 696863..697129 (-) | 267 | WP_004084112.1 | hypothetical protein | - |
| IUD24_RS02960 (IUD24_02960) | - | 697126..697404 (-) | 279 | WP_004083957.1 | hypothetical protein | - |
| IUD24_RS02965 (IUD24_02965) | - | 697401..697622 (-) | 222 | WP_021358638.1 | hypothetical protein | - |
| IUD24_RS02970 (IUD24_02970) | - | 697619..698077 (-) | 459 | WP_004084109.1 | hypothetical protein | - |
| IUD24_RS02975 (IUD24_02975) | - | 698074..698538 (-) | 465 | WP_021358639.1 | DUF1566 domain-containing protein | - |
| IUD24_RS10985 | - | 698535..698876 (-) | 342 | WP_228762220.1 | hypothetical protein | - |
| IUD24_RS02985 (IUD24_02985) | - | 699067..699645 (+) | 579 | WP_228762221.1 | hypothetical protein | - |
| IUD24_RS02990 (IUD24_02990) | - | 699747..700148 (-) | 402 | WP_021358642.1 | hypothetical protein | - |
| IUD24_RS02995 (IUD24_02995) | - | 700147..700635 (+) | 489 | WP_021358643.1 | CHC2 zinc finger domain-containing protein | - |
| IUD24_RS03000 (IUD24_03000) | - | 700571..701215 (+) | 645 | WP_228762222.1 | terminase gpA endonuclease subunit | - |
| IUD24_RS03005 (IUD24_03005) | - | 701292..701528 (+) | 237 | WP_012337727.1 | hypothetical protein | - |
| IUD24_RS03010 (IUD24_03010) | - | 701525..702040 (+) | 516 | WP_004083947.1 | phage portal protein | - |
| IUD24_RS10990 | - | 702205..702447 (+) | 243 | WP_228762223.1 | hypothetical protein | - |
| IUD24_RS11385 | - | 702461..702583 (+) | 123 | WP_324187556.1 | hypothetical protein | - |
| IUD24_RS03020 (IUD24_03020) | - | 702574..703002 (+) | 429 | WP_004086822.1 | hypothetical protein | - |
| IUD24_RS03025 (IUD24_03025) | - | 702999..703235 (+) | 237 | WP_004083943.1 | hypothetical protein | - |
| IUD24_RS03030 (IUD24_03030) | - | 703225..706050 (+) | 2826 | WP_012337728.1 | phage tail protein | - |
| IUD24_RS03035 (IUD24_03035) | - | 706043..706738 (+) | 696 | WP_228762224.1 | hypothetical protein | - |
| IUD24_RS03040 (IUD24_03040) | - | 706699..706977 (+) | 279 | WP_228762225.1 | hypothetical protein | - |
| IUD24_RS03045 (IUD24_03045) | - | 707086..707748 (+) | 663 | WP_228762226.1 | hypothetical protein | - |
| IUD24_RS11295 | - | 707808..707936 (-) | 129 | WP_256704593.1 | hypothetical protein | - |
| IUD24_RS03055 (IUD24_03055) | - | 707984..708091 (+) | 108 | Protein_594 | DNA adenine methylase | - |
| IUD24_RS03060 (IUD24_03060) | - | 708143..708769 (+) | 627 | WP_038230952.1 | IS607 family transposase | - |
| IUD24_RS03065 (IUD24_03065) | - | 708763..709959 (+) | 1197 | WP_012337730.1 | RNA-guided endonuclease TnpB family protein | - |
| IUD24_RS03070 (IUD24_03070) | - | 709966..710670 (+) | 705 | WP_154123795.1 | DNA adenine methylase | - |
| IUD24_RS03075 (IUD24_03075) | - | 710927..711325 (-) | 399 | WP_012337731.1 | hypothetical protein | - |
| IUD24_RS03080 (IUD24_03080) | - | 711376..711675 (-) | 300 | WP_004084250.1 | hypothetical protein | - |
| IUD24_RS11300 | - | 711809..711940 (-) | 132 | WP_256704532.1 | hypothetical protein | - |
| IUD24_RS03085 (IUD24_03085) | - | 712035..712277 (-) | 243 | WP_012337732.1 | hypothetical protein | - |
| IUD24_RS03090 (IUD24_03090) | - | 712683..713000 (-) | 318 | WP_004084245.1 | BrnA antitoxin family protein | - |
| IUD24_RS03095 (IUD24_03095) | - | 712960..713247 (-) | 288 | WP_004083921.1 | BrnT family toxin | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16536.38 Da Isoelectric Point: 6.4871
>NTDB_id=500742 IUD24_RS02925 WP_021358633.1 693858..694304(-) (ssb) [Xylella fastidiosa subsp. multiplex strain Red Oak]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSGRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGQDGQERYVTEIIADQMHMLGGRGEGSSGITPQRQPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSGRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGQDGQERYVTEIIADQMHMLGGRGEGSSGITPQRQPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=500742 IUD24_RS02925 WP_021358633.1 693858..694304(-) (ssb) [Xylella fastidiosa subsp. multiplex strain Red Oak]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGCAACCTGGGGAACGAACCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAGCATTAGCCTAGCGACCAGCAGCGGACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTTGGCGAGATTGCCGCCGAATATCTGCATAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAGTTCACCGGCCAGGACGGTCAGGAGCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGTGAAGGCTCCAGCGGTATCACGCCACAGCGGCAACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGCAACCTGGGGAACGAACCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAGCATTAGCCTAGCGACCAGCAGCGGACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTTGGCGAGATTGCCGCCGAATATCTGCATAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAGTTCACCGGCCAGGACGGTCAGGAGCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGTGAAGGCTCCAGCGGTATCACGCCACAGCGGCAACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
41.477 |
100 |
0.493 |
| ssb | Neisseria meningitidis MC58 |
38.728 |
100 |
0.453 |
| ssb | Neisseria gonorrhoeae MS11 |
38.728 |
100 |
0.453 |
| ssb | Glaesserella parasuis strain SC1401 |
41.304 |
93.243 |
0.385 |