Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   XF37_RS25935 Genome accession   NZ_CP076230
Coordinates   5164143..5164679 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O157:H7 strain Rafaela_II     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5159143..5169679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XF37_RS25915 (XF37_025730) soxR 5160872..5161336 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  XF37_RS25920 (XF37_025735) soxS 5161422..5161745 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  XF37_RS25925 (XF37_025740) pdeC 5161748..5163334 (-) 1587 WP_001016522.1 c-di-GMP phosphodiesterase PdeC -
  XF37_RS25930 (XF37_025745) yjcB 5163763..5164044 (+) 282 WP_001295689.1 YjcB family protein -
  XF37_RS25935 (XF37_025750) ssb 5164143..5164679 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  XF37_RS25940 (XF37_025755) uvrA 5164934..5167749 (+) 2816 Protein_5108 excinuclease ABC subunit UvrA -
  XF37_RS25945 (XF37_025760) yjbR 5167784..5168140 (-) 357 WP_000155652.1 MmcQ/YjbR family DNA-binding protein -
  XF37_RS25950 (XF37_025765) yjbQ 5168144..5168560 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  XF37_RS25955 (XF37_025770) aphA 5168671..5169384 (-) 714 WP_001226923.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=500595 XF37_RS25935 WP_000168305.1 5164143..5164679(-) (ssb) [Escherichia coli O157:H7 strain Rafaela_II]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=500595 XF37_RS25935 WP_000168305.1 5164143..5164679(-) (ssb) [Escherichia coli O157:H7 strain Rafaela_II]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489