Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   IQ680_RS07655 Genome accession   NZ_CP064266
Coordinates   1454191..1455318 (+) Length   375 a.a.
NCBI ID   WP_243525384.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1449191..1460318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS07625 spoIIIJ 1449223..1449990 (-) 768 WP_098336939.1 YidC family membrane integrase SpoIIIJ -
  IQ680_RS07630 rnpA 1450049..1450396 (-) 348 WP_243525382.1 ribonuclease P protein component -
  IQ680_RS07635 rpmH 1450473..1450607 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  IQ680_RS07640 dnaA 1451172..1452512 (+) 1341 WP_098336941.1 chromosomal replication initiator protein DnaA -
  IQ680_RS07645 dnaN 1452691..1453836 (+) 1146 WP_243525383.1 DNA polymerase III subunit beta -
  IQ680_RS07650 yaaA 1453966..1454178 (+) 213 WP_098336943.1 S4 domain-containing protein YaaA -
  IQ680_RS07655 recF 1454191..1455318 (+) 1128 WP_243525384.1 DNA replication/repair protein RecF Machinery gene
  IQ680_RS07660 gyrB 1455357..1457279 (+) 1923 WP_098336945.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  IQ680_RS07665 gyrA 1457368..1459839 (+) 2472 WP_243525385.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43462.77 Da        Isoelectric Point: 7.0361

>NTDB_id=500401 IQ680_RS07655 WP_243525384.1 1454191..1455318(+) (recF) [Bacillus pseudomycoides strain N451-2]
MFITEIQLKNYRNYEHLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGKIRGRLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILKKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKQAKTIHVTNGTVDCEMDRT

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=500401 IQ680_RS07655 WP_243525384.1 1454191..1455318(+) (recF) [Bacillus pseudomycoides strain N451-2]
TTGTTTATTACAGAAATACAACTAAAAAACTATCGCAATTATGAACATCTGGATCTTTCCTTTGAGGATAAAGTCAATGT
GATCATTGGTGAAAATGCACAAGGAAAAACGAATTTGATGGAAGCTATTTATGTATTAGCGATGGCGAAATCCCATCGAA
CTTCGAATGATCGTGAACTTATCCGGTGGGATGAGGATTATGGTAAAATAAGAGGTAGATTACAAAAGCGAAATAGTTCC
TTGTCTTTAGAATTAAATATTTCTAAAAAAGGGAAAAAGGCAAAGTTAAATCAACTAGAACAGCAAAAGTTAAGCCAATA
TATTGGTGAAATGAATGTTGTTATGTTTGCCCCAGAAGATTTAAACCTTGTAAAAGGAAGCCCTCAAGTACGAAGACGCT
TTTTGGATATGGAACTTGGGCAAATAGCTCCTGTCTATTTGTATGAATTAAGTCAATATCAAAAAGTGCTCACGCAGCGA
AATCACTTGCTTAAGAAAATGCAAGGGAATAGTAAAAATGAGGAAACGATGTTGGATGTGTTTACACTTCAACTCATTGA
ACATGGTGCGAAAATTTTAAAAAAACGTTTTGAGTTTCTGCATTTACTACAAGAATGGGCAGCTCCTATTCATCGTGGTA
TAAGTAGAGGATTAGAGGAGTTAGAAATTGTCTATAAACCAAGCGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAACAGTAAAAATGTTCAGGTCTTTGGTTCGCAAGGACAGCAACGAACAACCGCACTTT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAGGAATATCCAATTCTTTTATTAGATGATGTATTGTCA
GAATTAGATGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAGCAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATGGACA
GAACATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.663

98.133

0.664