Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IQ680_RS01660 Genome accession   NZ_CP064266
Coordinates   290977..291723 (-) Length   248 a.a.
NCBI ID   WP_243524476.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 285977..296723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS01640 dnaG 286786..288582 (-) 1797 WP_243524469.1 DNA primase -
  IQ680_RS01645 - 288621..289079 (-) 459 WP_243524472.1 YaiI/YqxD family protein -
  IQ680_RS01650 - 289395..290207 (-) 813 WP_243524474.1 pyruvate, water dikinase regulatory protein -
  IQ680_RS01655 - 290237..290869 (-) 633 WP_098335177.1 helix-turn-helix transcriptional regulator -
  IQ680_RS01660 recO 290977..291723 (-) 747 WP_243524476.1 DNA repair protein RecO Machinery gene
  IQ680_RS01665 - 291757..291900 (-) 144 WP_098335071.1 YqzL family protein -
  IQ680_RS01670 era 292011..292916 (-) 906 WP_098335072.1 GTPase Era -
  IQ680_RS01675 - 292909..293307 (-) 399 WP_001085019.1 cytidine deaminase -
  IQ680_RS01680 - 293412..293765 (-) 354 WP_243524477.1 diacylglycerol kinase family protein -
  IQ680_RS01685 ybeY 293762..294232 (-) 471 WP_243524480.1 rRNA maturation RNase YbeY -
  IQ680_RS01690 - 294229..296373 (-) 2145 WP_243524482.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28578.12 Da        Isoelectric Point: 7.7711

>NTDB_id=500384 IQ680_RS01660 WP_243524476.1 290977..291723(-) (recO) [Bacillus pseudomycoides strain N451-2]
MFQKVEGIVIRTTDYGETNKIVTIFSREFGKVSAMARGAKKPKSRLASISQLMMHGHFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMHPYFDTCAICHHEAD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFYHFDLARLGNVSVKDGTKRQMRTVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=500384 IQ680_RS01660 WP_243524476.1 290977..291723(-) (recO) [Bacillus pseudomycoides strain N451-2]
ATGTTTCAAAAAGTTGAGGGAATTGTTATCCGGACAACAGATTACGGAGAAACGAATAAAATTGTTACGATATTCTCACG
TGAGTTTGGAAAAGTAAGTGCAATGGCAAGAGGGGCGAAAAAGCCGAAAAGTAGGTTAGCATCTATTTCGCAACTTATGA
TGCATGGTCACTTTCTGATTCAAATGGGCTCTGGACTTGGGACTTTACAACAAGGTGAAATAATTTCATCTATGAAAGAA
ATTCGTGAAGATATATTTTTAACTGCTTATGCATCATTTATCGTTGAATTGACTGATAAAGCAACTGAAGATAAGAAACA
TAATCCGTACTTATTTGAAATGTTATATCAAACGTTGCACTACATGTGTGAGGGTGTTGATCCTGAAGTATTGTCTTTAA
TTTATCAAACGAAAATGCTTCCGGTACTTGGGATGCATCCATACTTTGATACATGTGCGATTTGTCACCATGAGGCAGAT
TTTGTCGCCTTCTCTGTCCGAGAAGGCGGTTTTCTGTGCTCACGCCATGCAGAGCAAGATCCATACCGTATTCCGGTGGG
AGAGGCCGTTCATAAATTATTACGCCTCTTTTATCATTTTGATTTAGCTCGCCTTGGTAATGTCTCTGTCAAGGATGGAA
CGAAGCGACAAATGCGTACAGTATTAAATACATATTATGATGAATATTGTGGAATCTATTTGAAATCAAGGCGTTTTCTG
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.87

99.597

0.556