Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IQ680_RS00990 Genome accession   NZ_CP064266
Coordinates   179109..180848 (-) Length   579 a.a.
NCBI ID   WP_098336317.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 174109..185848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS00975 - 174826..176346 (-) 1521 WP_243524302.1 glycosyltransferase family 39 protein -
  IQ680_RS00980 spo0A 176608..177402 (-) 795 WP_098336244.1 sporulation transcription factor Spo0A Regulator
  IQ680_RS00985 spoIVB 177689..178990 (-) 1302 WP_243524304.1 SpoIVB peptidase -
  IQ680_RS00990 recN 179109..180848 (-) 1740 WP_098336317.1 DNA repair protein RecN Machinery gene
  IQ680_RS00995 argR 181110..181559 (-) 450 WP_017150893.1 arginine repressor ArgR -
  IQ680_RS01000 - 181702..182541 (-) 840 WP_243524306.1 TlyA family RNA methyltransferase -
  IQ680_RS01005 dxs 182545..184437 (-) 1893 WP_243524307.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IQ680_RS01010 - 184789..185682 (-) 894 WP_243524309.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65810.87 Da        Isoelectric Point: 4.8592

>NTDB_id=500383 IQ680_RS00990 WP_098336317.1 179109..180848(-) (recN) [Bacillus pseudomycoides strain N451-2]
MLSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYIEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIMNQL
EIYQEVYGEYEQLKKQLKSLTENEQQMAHRLDLIQFQHEEIRKADLKADEENELTEERLKISNFEKIYKALSDAYRSLSE
DGSGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKKLKELESVILKEATILSDMRHQLADHLTNAIHQELKELYMEKTKFEVRIA
KREGIMDDPLVEGTPVKLTVNGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTEDKVTEIARMISGVEITDLTTEH
AKELLTQAHRFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=500383 IQ680_RS00990 WP_098336317.1 179109..180848(-) (recN) [Bacillus pseudomycoides strain N451-2]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGTCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
GAGTGGTGAAACAGGTGCTGGGAAATCAATTATTATTGATGCAATCAGCTTACTTGTTGGTGGCCGTGGTTCAGCAGAGT
TTGTTAGATACGGAACAGAGAAAGCTGAAATTGAAGGATTATTTTATATAGAGGATGATAAGCATCCATGTATTGCGAAG
GCTGAAGAGCTGGACATTGAAATTGAAGATGGGATGATTATTTTAAAGCGTGACATTGCTGCGAATGGAAAAAGTGTATG
TCGTGTAAATGGTAAGCTTGTAACATTGAGTATATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGACAACATG
AAACCCAAGATTTAATGAATGAGGAGCGCCATTTGTTTATGCTGGATCATTTCGATGGGGATCGTATTATGAACCAATTG
GAAATATATCAAGAAGTATATGGTGAGTATGAGCAGTTAAAAAAGCAACTCAAATCTTTAACAGAGAATGAACAACAGAT
GGCACATCGGTTAGATTTAATTCAATTTCAACATGAAGAAATTCGTAAAGCTGATTTGAAAGCTGATGAAGAAAATGAAT
TGACGGAAGAGAGATTAAAAATCTCTAATTTCGAAAAAATTTATAAAGCACTTAGTGATGCATACCGTTCATTAAGTGAA
GATGGTAGTGGACTTGACCATGTACGAAATGCAATGGGACAAATGGAGAGTATTACGCACTTAGATGAGGCGTATCAAGA
GAATCATGATTCGATTGCTAATAGCTACTACCTATTGGAAGAGGTTGCCTATCAGCTCCGTGAAAAGTTAGATATGATGG
AGTATGATCCGAATCGCTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATAGAGCAAGAAATTTTTACAATTGAAAATAAAGATGTACATATTGAAAC
GACGAAAAAGAAATTAAAAGAATTAGAAAGTGTGATTTTGAAGGAAGCAACAATATTGAGCGATATGCGTCATCAGCTTG
CAGATCACCTTACGAACGCAATTCATCAAGAATTAAAAGAATTGTATATGGAAAAAACAAAATTTGAAGTGAGGATTGCG
AAAAGAGAAGGAATCATGGATGACCCTCTTGTAGAAGGAACGCCAGTGAAACTTACGGTAAATGGATATGACCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAACCATTAAAACCACTGTCAAAAGTGGCTTCTGGTGGAGAATTATCACGTATTA
TTTTAGCTCTGAAAAGCATTTTTTCTAAACATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTAGATACAGGAGTGAGT
GGTCGAGTGGCACAAGCGATTGCAGAAAAAATTTATCGTGTATCTGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCGATGGCGGATTCGCATTTATTTATCCGTAAACAAGTTGCGAATGATCGGACGATTACATCAGTTACTG
TATTAAGTACAGAGGATAAGGTAACGGAGATTGCTCGAATGATCTCTGGCGTGGAAATTACCGATTTAACGACGGAACAT
GCAAAAGAGTTACTTACGCAAGCTCATCGTTTTAAACAGACAGCAGAGGCTATCCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.758

100

0.598