Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   IQ680_RS00980 Genome accession   NZ_CP064266
Coordinates   176608..177402 (-) Length   264 a.a.
NCBI ID   WP_098336244.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 171608..182402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS00970 - 173035..174462 (-) 1428 WP_243524299.1 hypothetical protein -
  IQ680_RS00975 - 174826..176346 (-) 1521 WP_243524302.1 glycosyltransferase family 39 protein -
  IQ680_RS00980 spo0A 176608..177402 (-) 795 WP_098336244.1 sporulation transcription factor Spo0A Regulator
  IQ680_RS00985 spoIVB 177689..178990 (-) 1302 WP_243524304.1 SpoIVB peptidase -
  IQ680_RS00990 recN 179109..180848 (-) 1740 WP_098336317.1 DNA repair protein RecN Machinery gene
  IQ680_RS00995 argR 181110..181559 (-) 450 WP_017150893.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29465.27 Da        Isoelectric Point: 7.4717

>NTDB_id=500382 IQ680_RS00980 WP_098336244.1 176608..177402(-) (spo0A) [Bacillus pseudomycoides strain N451-2]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTGHIRQVSGKANTTIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=500382 IQ680_RS00980 WP_098336244.1 176608..177402(-) (spo0A) [Bacillus pseudomycoides strain N451-2]
GTGGAGAAAATTAAAGTGTGTCTTGTGGATGATAATAAGGAACTAGTATCAATGTTAGAAAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTAATCGGGATTGCTTATAATGGTCAAGAGTGCTTAAATTTACTGAAAGAGAAACAACCAGATGTACTCG
TTTTAGATATTATTATGCCTCATTTAGATGGCCTAGCGGTACTAGAGAAAATGCGACATATTGAACGGCTAAAGCAGCCA
AATGTTATCATGTTAACAGCATTTGGACAAGAAGATGTAACGAAAAAAGCAGTTGATTTAGGTGCTTCTTATTTTATCTT
AAAGCCATTTGATATGGAAAATTTAACGGGGCATATTCGTCAAGTTAGCGGTAAAGCGAATACTACAATTAAGCGTCCAC
TACCATCTTTCCGATCTGCAACAACAGTAGATGGAAAACCGAAGAATCTAGATGCGAGTATTACAAGTATTATTCACGAA
ATTGGTGTACCAGCTCATATTAAAGGATATATGTATTTGCGAGAGGCAATTTCTATGGTGTATAACGATATTGAACTTCT
TGGTTCTATTACAAAAGTTTTATACCCAGATATTGCGAAAAAATATAATACGACAGCAAGCCGTGTGGAACGCGCAATCC
GCCATGCGATTGAAGTAGCGTGGAGTCGTGGGAATATTGATTCAATCTCGTCCTTATTTGGCTATACCGTATCGATGTCA
AAAGCAAAGCCTACAAATTCTGAATTCATCGCAATGGTTGCGGATAAGTTGAGACTTGAACATAAGGCGAGCTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

82.397

100

0.833