Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   IQ680_RS02105 Genome accession   NZ_CP064266
Coordinates   369480..371816 (-) Length   778 a.a.
NCBI ID   WP_243524586.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 364480..376816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS02085 - 367516..368574 (-) 1059 WP_243524584.1 AI-2E family transporter -
  IQ680_RS02090 - 368743..368955 (+) 213 WP_098335142.1 hypothetical protein -
  IQ680_RS02095 - 369002..369130 (-) 129 WP_001102898.1 YrzQ family protein -
  IQ680_RS02100 - 369149..369337 (-) 189 WP_000490499.1 hypothetical protein -
  IQ680_RS02105 recD2 369480..371816 (-) 2337 WP_243524586.1 ATP-dependent RecD-like DNA helicase Machinery gene
  IQ680_RS02110 - 371919..372578 (-) 660 WP_243524588.1 tetratricopeptide repeat protein -
  IQ680_RS02115 mnmA 372690..373805 (-) 1116 WP_098335145.1 tRNA 2-thiouridine(34) synthase MnmA -
  IQ680_RS02120 - 373822..374967 (-) 1146 WP_243524589.1 cysteine desulfurase family protein -
  IQ680_RS02125 cymR 375003..375419 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87325.03 Da        Isoelectric Point: 5.1936

>NTDB_id=500386 IQ680_RS02105 WP_243524586.1 369480..371816(-) (recD2) [Bacillus pseudomycoides strain N451-2]
MGNQHAMDLFEEEQKFIKAQVLHTIFHNEENLYSVVSMKIIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFRDHPKYG
KQYLVETFKKELPQTKTGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPSALEGVVNKQKAQEIYDTIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHNDRVRAGCFYTLENVS
LQDGHVFMGKDQLVQETMLLLNKQEGIVTEEDVVQCIEMMQGEGKVIIEDERIYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLLTLGKIEEQLKVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPKDYSDDNPFSI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRSETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIIVGD
EDQLPSVGPGQVLKDLLDAGAIPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNKKDRSFIGCSGTQIVEVVKQVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSREIAYGDVVYRVGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEKQDMVVVSFDGIEVTYIKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEESAFQSGVNRLDDSMRQTTLAGRLQESKGELQMVTIDGQEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=500386 IQ680_RS02105 WP_243524586.1 369480..371816(-) (recD2) [Bacillus pseudomycoides strain N451-2]
ATGGGAAACCAACATGCGATGGATTTGTTTGAGGAAGAGCAAAAATTTATAAAAGCACAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAATCATTGAAACAAATGAAACATACGACGAAAAAAAAGTGATGA
TAAATGGTCACTTTCCCCGTATGCATGAAGATGAAGTATTTACATTGACAGGTCACTTTAGGGACCACCCAAAGTACGGA
AAGCAATATTTAGTTGAAACATTTAAAAAAGAATTGCCTCAAACAAAAACAGGTATGGTGCAATATTTAGCGAGTGATTT
GTTTAAAGGGATTGGAAAACGGACGGCAGAAAAGATTGTTGATCATCTCGGGGAGCATGCAATTTCTAAAATTATGGACG
ATCCATCTGCGTTAGAAGGTGTTGTAAACAAGCAGAAAGCGCAAGAAATATACGACACGATTATTGAACACCAAGGTCTT
GAAAAGGTTATGAGCTTTTTAAATGGTTATGGTTTTGGAACGAAGCTCTCGATTAAGATTTATCAGCAATATAAAGAAAT
GACGCTTGAGGTAATTCGGAACAATCCGTACCAGCTTATTGAGGAAGTAGATGGTATTGGATTTGGAAGAGCAGATGATA
TAGGACGAGCGCTTGGTATATCAGGGAATCATAATGACCGTGTACGTGCTGGATGTTTCTATACGCTAGAGAATGTTTCA
CTGCAAGATGGGCACGTATTTATGGGAAAAGACCAACTTGTTCAAGAAACGATGTTACTTTTGAATAAGCAAGAGGGCAT
TGTGACAGAAGAAGATGTAGTGCAGTGTATTGAAATGATGCAAGGAGAAGGGAAAGTTATTATCGAAGACGAACGTATTT
ATTTGGCTTCTTTGTTTTATTCTGAAAAGGGTGTCGTCAAATCAATTCGTCGTCTCATGAATCAAGAAGAGACACCTTCA
TTTCCTGAAGCAGAAGTGCTATTAACACTAGGGAAAATTGAAGAGCAGCTAAAAGTACAATACGCACCGCTTCAGCAAGA
AGCAATTCAAACTGCACTTCATAAACCGATGATGTTATTAACCGGTGGACCTGGTACAGGGAAGACAACGGTTATTAAAG
GAATTGTTGAAATGTATGCTTCCTTGCATGGTTTATCATTAAATCCGAAGGATTACAGTGATGATAATCCGTTTTCGATT
TTGTTAACAGCTCCAACAGGCCGTGCTGCGAAGAGAATGAGTGAGTCGACAGGGCTTCCTGCTTGTACAATTCATCGCTT
ACTTGGCTGGACGCCAGAAGGATCGTTCCAGCGCAGTGAAACGGATCCGGTGCAAGGGAAGTTGCTTATTATCGATGAGT
TTTCAATGGTTGATATTTGGCTTGCAAATCAATTGTTTAAATCATTACCAACAAATATTCAAGTAATTATTGTAGGTGAT
GAAGATCAATTGCCGTCTGTAGGACCTGGACAAGTATTGAAAGATTTATTAGATGCGGGTGCGATTCCGACAGTGAAGTT
AACAGAGATTTACCGTCAAGCAGAAGGATCATCCGTTATTCAGCTTGCACATGCGATAAAAAATGGCACGCTACCACCGG
ACTTAGCACAAAATAAAAAAGATCGTTCGTTTATTGGTTGCTCAGGTACTCAAATTGTTGAGGTTGTAAAACAAGTATGT
GAAAACGCGAAAACGAAAGGGTTTAGCGCAAGAGATGTACAAGTGTTAGCGCCTATGTATCGTGGTCCGGCAGGGATTAA
TGTGTTGAATGAGGCACTTCAAGAAGTGTTTAATCCGAAAAAAGAAAAAAGTAGAGAAATTGCCTACGGTGATGTTGTGT
ATCGTGTTGGTGATAAAGTCTTGCAACTCGTCAATCAACCAGAAAGCCAAGTGTTTAATGGTGATATTGGAGAAATTGTT
TCTGTCTTTTATGCAAAAGAGAATGTGGAAAAACAAGATATGGTTGTCGTTTCATTTGATGGGATTGAAGTAACGTATAT
AAAGCCAGATTTAAATCAAATTACACATGCGTATTGTTGTTCAATTCATAAGTCCCAAGGAAGTGAGTTCCCAATTGTAA
TCATGCCGATTGTAAAGAGTTATTATCGTATGTTGCGTCGTAATTTAATTTATACAGGTATTACGAGAAGTAAAAAGTTT
TTAATTATTTGCGGGGAAGAATCAGCTTTTCAATCTGGTGTGAATCGTCTTGATGATTCAATGCGACAAACAACGTTAGC
TGGTCGCTTGCAGGAATCAAAAGGGGAATTGCAAATGGTTACGATTGATGGTCAGGAGATGGATGTGGAAAACATTTCAC
CGTATGATTTTATGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-547)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.396

100

0.584