Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   IQ680_RS02190 Genome accession   NZ_CP064266
Coordinates   388374..390713 (-) Length   779 a.a.
NCBI ID   WP_243524603.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 383374..395713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS02160 - 384044..384220 (-) 177 WP_098335154.1 hypothetical protein -
  IQ680_RS02165 - 384311..384538 (-) 228 WP_314110230.1 YrdB family protein -
  IQ680_RS02170 - 384694..384801 (-) 108 WP_396124321.1 DUF2568 domain-containing protein -
  IQ680_RS02175 - 384957..385397 (-) 441 WP_243524601.1 D-tyrosyl-tRNA(Tyr) deacylase -
  IQ680_RS02180 relA 385415..387601 (-) 2187 WP_098335157.1 GTP diphosphokinase -
  IQ680_RS02185 - 387814..388326 (-) 513 WP_098335158.1 adenine phosphoribosyltransferase -
  IQ680_RS02190 recJ 388374..390713 (-) 2340 WP_243524603.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  IQ680_RS02195 - 390837..391730 (-) 894 WP_243524605.1 cation diffusion facilitator family transporter -
  IQ680_RS02200 secDF 391977..394241 (-) 2265 WP_243524606.1 protein translocase subunit SecDF -
  IQ680_RS02205 - 394582..394866 (-) 285 WP_243524607.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 87854.32 Da        Isoelectric Point: 4.8922

>NTDB_id=500387 IQ680_RS02190 WP_243524603.1 388374..390713(-) (recJ) [Bacillus pseudomycoides strain N451-2]
MLQPKTRWKEKSFNEEQVSELASKLQLSPLVTSLFLGRGLDTEDKIVDFLNAAGQEFHDPFLLEGMDRTVERVKQAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGVAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VQRGLKQMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAIGRLEDAAPAVHLLLSEDPEEAKELAEEIDEMNKL
RKDIVKQITEEAIAEVENNYLPADNKVLVLAREGWNPGVIGIVASKLVELFYRPTIVLCIDPEKQTAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTPEDFTPITTVDAICKVEDVTLSAIEEMQKLAPFGV
GNPKPRIAIRDAELESIRAIGSDGSHLKMGLRGGQATLDTIGFGFGAYAKEISPVAHVSVVGEASINEWNNFKKPQLMIQ
DIAVDAWQLFDWRSMRNVESNLAELSREKVTMVYFSEEVLNKFSLEEYKEQLMHASEVNELDDRYIVLLDLPKATDELRG
LFKVGFPARIYTLFYQENNHLFSTVPTREHFKWYYSFLHQKAPFSLRQHGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMAEEMKKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFEAIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=500387 IQ680_RS02190 WP_243524603.1 388374..390713(-) (recJ) [Bacillus pseudomycoides strain N451-2]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAGTCATTTAATGAAGAGCAGGTAAGTGAGTTGGCAAGTAAATTGCAATT
ATCACCGCTTGTTACTTCGTTATTCCTCGGTAGAGGCTTAGATACAGAAGATAAGATTGTGGATTTTTTAAATGCAGCAG
GGCAAGAATTTCACGATCCATTTTTACTTGAAGGAATGGACCGTACGGTAGAACGTGTAAAGCAAGCCATTCAAAATGGA
GAACAAATTTTGATTTTTGGTGACTACGATGCCGACGGTGTAAGTAGTACGACAGTGTTATACCTTGCACTTCAAGAACT
AGGTGCGGATGTTGAGTTCTATATTCCAAACCGATTTACGGAAGGGTATGGACCGAATGAAGAGGCATTTCGCTGGGCAC
ACAGTGCGGGATTTTCTCTTATCATTACTGTTGATACAGGTGTCGCAGCAGTTCATGAAGCTAAGGTCGCAAAAGAGCTT
GGTATAGATTTAATTATTACAGATCATCATGAACCGCCGCCAGAACTACCGGAAGCACTTGCGATTATTCATCCAAAGCT
AGAAGGCGGTGTTTATCCGTTTCATTATTTAGCGGGCGTTGGTGTTGCGTTTAAAGTAGCACATGCATTACTTGGACGTG
TACCAGAGCATTTATTAGAAATTGCGGTGATTGGTACGGTGGCCGATTTAGTATCGCTTCATGGTGAAAATAGATTGCTT
GTACAGCGCGGACTGAAACAAATGCGAATGACGAAAAATATTGGTTTAAAAGCATTATTTAAAGTAGCGAATGTTTCACA
AAGCGAGATTACGGAAGAAAGCATTGGCTTCTCAATTGCACCGCGTATTAATGCAATCGGTCGTTTAGAAGATGCGGCAC
CAGCTGTTCATCTTCTTTTATCAGAGGATCCAGAAGAAGCAAAAGAGCTTGCTGAAGAAATCGATGAAATGAATAAGCTT
CGAAAAGATATAGTAAAGCAAATTACAGAAGAGGCGATTGCAGAGGTAGAAAACAACTATCTTCCAGCGGACAATAAAGT
ACTAGTCCTTGCGAGAGAAGGATGGAATCCAGGTGTGATAGGGATTGTTGCTTCTAAATTAGTAGAGCTTTTCTATCGCC
CAACAATTGTATTGTGTATTGATCCTGAGAAGCAAACAGCAAAAGGATCTGCGCGTAGTATTGCAGGGTTTGATTTGTTT
GCGAACTTATCAGATTGTAGGGAATTGTTACCGCATTTTGGGGGGCATCCAATGGCGGCGGGAATGACGCTTCACATGAA
TGATGTAGACGAACTACGTCGCCGTTTAAATGAACAAGCAGATGCGATCTTAACTCCTGAAGATTTTACACCGATTACAA
CAGTTGATGCGATTTGTAAAGTGGAGGATGTGACGCTCTCAGCGATTGAAGAAATGCAGAAGCTCGCGCCATTTGGCGTT
GGCAATCCGAAGCCGCGTATCGCAATTAGAGATGCAGAGTTAGAAAGTATTCGTGCGATTGGATCTGATGGTTCGCATTT
AAAAATGGGACTTCGCGGGGGACAGGCAACGTTAGATACGATTGGATTTGGGTTTGGAGCCTATGCGAAAGAAATTTCTC
CAGTTGCTCACGTTTCTGTTGTCGGTGAGGCATCTATTAATGAATGGAATAATTTCAAAAAACCACAACTTATGATTCAA
GATATTGCGGTAGACGCGTGGCAATTATTTGATTGGCGCAGCATGCGTAATGTAGAATCGAATTTAGCGGAACTTTCGCG
AGAAAAGGTAACAATGGTGTATTTTTCTGAAGAGGTATTAAATAAATTTTCTTTAGAAGAATATAAAGAACAACTTATGC
ATGCTTCAGAAGTGAATGAGTTAGATGATCGCTATATTGTTTTGCTAGATTTACCAAAGGCAACAGATGAATTGCGTGGT
TTATTTAAGGTGGGCTTCCCAGCGCGAATTTATACGCTGTTTTATCAAGAGAATAATCATTTATTTAGTACGGTTCCAAC
AAGAGAACATTTTAAATGGTACTATTCCTTTTTACATCAAAAAGCACCGTTTTCTTTAAGACAACATGGGGAACAACTAT
GTCGTCATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GACGGTGTCATTTTTATGGCAGAAGAAATGAAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CCTGCAATTAGAAAAAGAGTTGGTTTATAGCACATATCAACAACTATATACATGGTTTGAAGCGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.713

99.358

0.524