Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ETEC_RS23775 Genome accession   NC_017633
Coordinates   4736267..4736803 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli ETEC H10407     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4731267..4741803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETEC_RS23755 (ETEC_4365) aphA 4731556..4732269 (+) 714 WP_001395166.1 acid phosphatase AphA -
  ETEC_RS23760 (ETEC_4366) yjbQ 4732380..4732796 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ETEC_RS23765 (ETEC_4367) yjbR 4732800..4733156 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ETEC_RS23770 (ETEC_4368) uvrA 4733191..4736013 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  ETEC_RS23775 (ETEC_4369) ssb 4736267..4736803 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ETEC_RS23780 (ETEC_4370) yjcB 4736902..4737183 (-) 282 WP_001295689.1 YjcB family protein -
  ETEC_RS23785 (ETEC_4371) pdeC 4737613..4739199 (+) 1587 Protein_4572 c-di-GMP phosphodiesterase PdeC -
  ETEC_RS23795 (ETEC_4372) soxS 4739202..4739525 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ETEC_RS23800 (ETEC_4373) soxR 4739611..4740075 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=50014 ETEC_RS23775 WP_000168305.1 4736267..4736803(+) (ssb) [Escherichia coli ETEC H10407]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=50014 ETEC_RS23775 WP_000168305.1 4736267..4736803(+) (ssb) [Escherichia coli ETEC H10407]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment