Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ISN39_RS08040 Genome accession   NZ_CP064187
Coordinates   1590355..1590873 (+) Length   172 a.a.
NCBI ID   WP_022715584.1    Uniprot ID   A0A559SNQ4
Organism   Rhizobium sp. 007     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1585355..1595873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN39_RS08030 (ISN39_08030) - 1586326..1587132 (-) 807 WP_194729695.1 DUF72 domain-containing protein -
  ISN39_RS08035 (ISN39_08035) uvrA 1587180..1590104 (-) 2925 WP_194729696.1 excinuclease ABC subunit UvrA -
  ISN39_RS08040 (ISN39_08040) ssb 1590355..1590873 (+) 519 WP_022715584.1 single-stranded DNA-binding protein Machinery gene
  ISN39_RS08045 (ISN39_08045) chrA 1590966..1592369 (-) 1404 WP_194729697.1 chromate efflux transporter -
  ISN39_RS08050 (ISN39_08050) - 1592384..1593199 (-) 816 WP_074068102.1 sulfurtransferase/chromate resistance protein -
  ISN39_RS08055 (ISN39_08055) - 1593342..1593974 (-) 633 WP_074068104.1 MarC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18475.16 Da        Isoelectric Point: 5.3175

>NTDB_id=500015 ISN39_RS08040 WP_022715584.1 1590355..1590873(+) (ssb) [Rhizobium sp. 007]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQNGNDRYSTEVVLQGFNSTLTMLDGRGEGGGASAGGGRGSSNDFGGGGNYGDDYGAPAQPSGRSSGGGG
NFSRDLDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=500015 ISN39_RS08040 WP_022715584.1 1590355..1590873(+) (ssb) [Rhizobium sp. 007]
ATGGCTGGCAGCGTGAACAAGGTAATTCTGATCGGAAACGTGGGCGCAGACCCCGAAATCCGCAGGACGCAGGACGGCCG
CCCGATTGCCAATCTTCGCATCGCGACGTCCGAGACGTGGCGTGACCGCAATTCCGGCGAGCGCCGCGAAAAAACCGAGT
GGCACACCGTCGTCGTTTTCAACGAAGGTCTCTGCAAGGTTGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTCCAGACCCGCAAATGGCAGGACCAGAACGGCAACGACCGCTATTCGACGGAAGTCGTGCTACAGGGGTT
CAATTCGACGCTGACGATGCTCGACGGCCGCGGCGAAGGCGGCGGTGCGAGCGCCGGCGGCGGACGCGGCAGCAGCAACG
ATTTCGGTGGCGGCGGCAATTACGGAGACGATTACGGCGCCCCGGCGCAGCCGTCCGGTCGCAGCAGCGGTGGCGGCGGG
AATTTCTCGCGCGATCTCGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A559SNQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.889

100

0.512
  ssb Glaesserella parasuis strain SC1401

45.026

100

0.5
  ssb Neisseria meningitidis MC58

38.889

100

0.407
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.407