Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   IS519_RS04045 Genome accession   NZ_CP064170
Coordinates   911548..912129 (-) Length   193 a.a.
NCBI ID   WP_060982740.1    Uniprot ID   A0A5M9P1L9
Organism   Vibrio crassostreae strain ED395     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 906548..917129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS519_RS04025 (IS519_04015) - 906677..907939 (-) 1263 WP_048609212.1 DUF945 family protein -
  IS519_RS04030 (IS519_04020) - 908123..910066 (+) 1944 WP_248640497.1 ATP-binding protein -
  IS519_RS04035 (IS519_04025) - 910059..910556 (+) 498 WP_248640499.1 response regulator -
  IS519_RS04040 (IS519_04030) - 910844..911386 (+) 543 WP_248640501.1 hypothetical protein -
  IS519_RS04045 (IS519_04035) tfoX 911548..912129 (-) 582 WP_060982740.1 TfoX/Sxy family DNA transformation protein Regulator
  IS519_RS04050 (IS519_04040) - 912488..913408 (+) 921 WP_248640503.1 HDOD domain-containing protein -
  IS519_RS04055 (IS519_04045) - 913463..914368 (+) 906 WP_248640505.1 lysine exporter LysO family protein -
  IS519_RS04060 (IS519_04050) - 914543..915070 (+) 528 WP_017066066.1 hypothetical protein -
  IS519_RS04065 (IS519_04055) panP 915189..916832 (+) 1644 WP_172380220.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22219.62 Da        Isoelectric Point: 8.6179

>NTDB_id=499924 IS519_RS04045 WP_060982740.1 911548..912129(-) (tfoX) [Vibrio crassostreae strain ED395]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEGCLFIRGGKSLDKKLTDLDCEKYRHVKKQTTATVNYYDITD
LFTCEHPELDCIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVREAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=499924 IS519_RS04045 WP_060982740.1 911548..912129(-) (tfoX) [Vibrio crassostreae strain ED395]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAGCATCAAAAACGTTCTATGTTCGGAGGTATTGGCCT
CTTTCAAAATGACGCGATGTTCGCTTTATTGAGTGAAGGTTGTTTATTCATTAGAGGTGGAAAATCATTAGATAAAAAAC
TGACCGATCTTGATTGTGAAAAGTATCGTCATGTAAAGAAGCAGACAACAGCAACCGTAAACTATTACGACATTACGGAT
CTGTTTACCTGTGAACATCCTGAATTGGATTGCATTATTCGTACTTCAATCGATAATTCAATTCAGCAGCGTAGCTTCAA
GAAATCATCAGCTAGCCGTAGATTAAGAGATCTACCAAACATGCAGCTTACGTTGGAGCGCATGGTTAAAAAGGCGGGTG
TGGATGATGTTTCAATGTTTATGCAGTTGGGCGCGCCTGAAGTGTTTAATAAGGTTCGCGAAGCGTACGGAAACGATGTT
GACCTAAAACTACTTTGGAAATTTGCGGGTGCAATTGATGGTATTCACTGGAAACTATTACAAGAGCCACGCAAGCAGCA
ATTACTAAAGAGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9P1L9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.575

100

0.736
  tfoX Vibrio cholerae strain A1552

73.575

100

0.736
  tfoX Vibrio campbellii strain DS40M4

70.466

100

0.705
  tfoX Vibrio parahaemolyticus RIMD 2210633

70.466

100

0.705
  tfoX Aliivibrio fischeri ES114

57.368

98.446

0.565