Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | K748_RS06205 | Genome accession | NC_021882 |
| Coordinates | 1256224..1256775 (+) | Length | 183 a.a. |
| NCBI ID | WP_015644931.1 | Uniprot ID | - |
| Organism | Helicobacter pylori UM298 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1251224..1261775
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K748_RS06190 (K748_07740) | cysS | 1251403..1252800 (-) | 1398 | WP_015644928.1 | cysteine--tRNA ligase | - |
| K748_RS06195 (K748_07745) | murJ | 1252801..1254261 (-) | 1461 | WP_015644929.1 | murein biosynthesis integral membrane protein MurJ | - |
| K748_RS06200 (K748_07750) | - | 1254354..1256198 (+) | 1845 | WP_015644930.1 | hypothetical protein | - |
| K748_RS06205 (K748_07755) | ruvA | 1256224..1256775 (+) | 552 | WP_015644931.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| K748_RS06210 (K748_07760) | - | 1257031..1259508 (+) | 2478 | WP_015644932.1 | DUF3519 domain-containing protein | - |
| K748_RS06215 (K748_07765) | - | 1259523..1259963 (+) | 441 | WP_015644933.1 | hypothetical protein | - |
| K748_RS06220 (K748_07770) | - | 1259920..1261056 (-) | 1137 | WP_000462011.1 | NAD-binding protein | - |
| K748_RS06225 (K748_07775) | rpmB | 1261206..1261394 (-) | 189 | WP_001119000.1 | 50S ribosomal protein L28 | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20099.66 Da Isoelectric Point: 8.5032
>NTDB_id=49983 K748_RS06205 WP_015644931.1 1256224..1256775(+) (ruvA) [Helicobacter pylori UM298]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDEASPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLHS
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDEASPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLHS
Nucleotide
Download Length: 552 bp
>NTDB_id=49983 K748_RS06205 WP_015644931.1 1256224..1256775(+) (ruvA) [Helicobacter pylori UM298]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGCAAAAAGCTTGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAGCTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCACTCTTAA
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGCAAAAAGCTTGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAGCTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCACTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Helicobacter pylori 26695 |
93.989 |
100 |
0.94 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
33.333 |
100 |
0.366 |
| ruvA | Streptococcus pneumoniae R6 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae D39 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae TIGR4 |
33.846 |
100 |
0.361 |