Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | K748_RS00850 | Genome accession | NC_021882 |
| Coordinates | 169312..170322 (+) | Length | 336 a.a. |
| NCBI ID | WP_000664520.1 | Uniprot ID | - |
| Organism | Helicobacter pylori UM298 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 164312..175322
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K748_RS00825 (K748_02090) | - | 164505..165827 (-) | 1323 | WP_015645315.1 | M23 family metallopeptidase | - |
| K748_RS00830 (K748_02095) | - | 165837..166775 (-) | 939 | WP_020849726.1 | outer membrane beta-barrel protein | - |
| K748_RS00835 (K748_02100) | - | 166784..167638 (-) | 855 | WP_015645317.1 | outer membrane beta-barrel protein | - |
| K748_RS00840 (K748_02105) | - | 167628..168350 (-) | 723 | WP_015645964.1 | hypothetical protein | - |
| K748_RS00845 (K748_02110) | panB | 168499..169311 (+) | 813 | WP_015645319.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| K748_RS00850 (K748_02115) | ruvB | 169312..170322 (+) | 1011 | WP_000664520.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| K748_RS00855 (K748_02120) | tatB | 170390..170872 (+) | 483 | WP_015645320.1 | Sec-independent protein translocase protein TatB | - |
| K748_RS00860 (K748_02125) | tatC | 170865..171623 (+) | 759 | WP_015645321.1 | twin-arginine translocase subunit TatC | - |
| K748_RS00865 (K748_02130) | queA | 171627..172664 (+) | 1038 | WP_015645322.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| K748_RS00870 (K748_02135) | rsmG | 172661..173197 (+) | 537 | WP_001068814.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| K748_RS00875 (K748_02140) | - | 173191..173421 (+) | 231 | WP_000944427.1 | PP0621 family protein | - |
| K748_RS00880 (K748_02145) | - | 173424..173831 (+) | 408 | WP_015645323.1 | hypothetical protein | - |
| K748_RS00890 (K748_02155) | - | 173963..174565 (-) | 603 | WP_000291636.1 | outer membrane protein | - |
| K748_RS00895 (K748_02160) | - | 174855..175229 (+) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37337.30 Da Isoelectric Point: 6.0715
>NTDB_id=49954 K748_RS00850 WP_000664520.1 169312..170322(+) (ruvB) [Helicobacter pylori UM298]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=49954 K748_RS00850 WP_000664520.1 169312..170322(+) (ruvB) [Helicobacter pylori UM298]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTACATCGGTCAAGAAAAAATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCTATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCAGCTATGGAAGATTTTAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCACCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAGTTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTACATCGGTCAAGAAAAAATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCTATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCAGCTATGGAAGATTTTAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCACCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAGTTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.87 |
96.131 |
0.518 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.774 |
96.131 |
0.488 |
| ruvB | Streptococcus pneumoniae R6 |
50.774 |
96.131 |
0.488 |
| ruvB | Streptococcus pneumoniae D39 |
50.774 |
96.131 |
0.488 |
| ruvB | Synechocystis sp. PCC 6803 |
51.104 |
94.345 |
0.482 |