Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IRJ28_RS01930 Genome accession   NZ_CP064096
Coordinates   385895..386539 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain N1142-3at     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 380895..391539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS01900 - 381283..381651 (-) 369 WP_003243784.1 hypothetical protein -
  IRJ28_RS01905 - 381765..381890 (-) 126 WP_003228793.1 hypothetical protein -
  IRJ28_RS01910 degQ 382112..382252 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  IRJ28_RS01915 comQ 382437..383336 (+) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  IRJ28_RS01920 comX 383324..383491 (+) 168 WP_003242801.1 competence pheromone ComX Regulator
  IRJ28_RS01925 comP 383506..385814 (+) 2309 Protein_381 two-component system sensor histidine kinase ComP -
  IRJ28_RS01930 comA 385895..386539 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  IRJ28_RS01935 yuxO 386558..386938 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  IRJ28_RS01940 mnhG 386977..387351 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  IRJ28_RS01945 mrpF 387335..387619 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  IRJ28_RS01950 mrpE 387619..388095 (-) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  IRJ28_RS01955 mrpD 388101..389582 (-) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  IRJ28_RS01960 mrpC 389575..389916 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  IRJ28_RS01965 mrpB 389916..390347 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=499443 IRJ28_RS01930 WP_003220716.1 385895..386539(+) (comA) [Bacillus subtilis strain N1142-3at]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=499443 IRJ28_RS01930 WP_003220716.1 385895..386539(+) (comA) [Bacillus subtilis strain N1142-3at]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1