Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JFX43_RS15320 Genome accession   NZ_CP075652
Coordinates   3172818..3173285 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain STEC17-183     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3167818..3178285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFX43_RS15295 (JFX43_015295) rpsG 3167959..3168429 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JFX43_RS15300 (JFX43_015300) fusA 3168526..3170640 (+) 2115 WP_000124700.1 elongation factor G -
  JFX43_RS15305 (JFX43_015305) tuf 3170711..3171895 (+) 1185 WP_000031783.1 elongation factor Tu -
  JFX43_RS15310 (JFX43_015310) bfd 3172078..3172272 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JFX43_RS15315 (JFX43_015315) bfr 3172345..3172821 (+) 477 WP_000675515.1 bacterioferritin -
  JFX43_RS15320 (JFX43_015320) pilD 3172818..3173285 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  JFX43_RS15325 (JFX43_015325) rpsJ 3173664..3173975 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JFX43_RS15330 (JFX43_015330) rplC 3174008..3174637 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JFX43_RS15335 (JFX43_015335) rplD 3174648..3175253 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JFX43_RS15340 (JFX43_015340) rplW 3175250..3175552 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JFX43_RS15345 (JFX43_015345) rplB 3175570..3176391 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JFX43_RS15350 (JFX43_015350) rpsS 3176408..3176686 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JFX43_RS15355 (JFX43_015355) rplV 3176701..3177033 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JFX43_RS15360 (JFX43_015360) rpsC 3177051..3177752 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JFX43_RS15365 (JFX43_015365) rplP 3177765..3178175 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=499441 JFX43_RS15320 WP_000339836.1 3172818..3173285(-) (pilD) [Escherichia coli strain STEC17-183]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=499441 JFX43_RS15320 WP_000339836.1 3172818..3173285(-) (pilD) [Escherichia coli strain STEC17-183]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361