Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IRJ27_RS12915 Genome accession   NZ_CP064095
Coordinates   2529679..2530368 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain N1303-2Ay     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2524679..2535368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS12895 tagO 2525245..2526321 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  IRJ27_RS12900 tagV 2526394..2527569 (-) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  IRJ27_RS12905 yvyE 2527569..2528222 (-) 654 WP_003227979.1 YigZ family protein -
  IRJ27_RS12910 degS 2528439..2529596 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  IRJ27_RS12915 degU 2529679..2530368 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IRJ27_RS12920 fakBA 2530466..2531311 (+) 846 WP_003244125.1 DegV family protein -
  IRJ27_RS12925 comFA 2531417..2532808 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  IRJ27_RS12930 comFB 2532868..2533164 (+) 297 WP_003227989.1 late competence protein ComFB -
  IRJ27_RS12935 comFC 2533128..2533850 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  IRJ27_RS12940 yvyF 2533924..2534343 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  IRJ27_RS12945 flgM 2534424..2534690 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  IRJ27_RS12950 flgN 2534706..2535188 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=499404 IRJ27_RS12915 WP_003219701.1 2529679..2530368(+) (degU) [Bacillus subtilis strain N1303-2Ay]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=499404 IRJ27_RS12915 WP_003219701.1 2529679..2530368(+) (degU) [Bacillus subtilis strain N1303-2Ay]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1