Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IRJ26_RS07820 Genome accession   NZ_CP064094
Coordinates   1486696..1487214 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain N1108-5at     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1481696..1492214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS07800 yyzM 1482770..1482976 (+) 207 WP_003226838.1 DUF951 family protein -
  IRJ26_RS07805 yyaE 1483027..1485030 (+) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  IRJ26_RS07810 ychF 1485157..1486257 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  IRJ26_RS07815 rpsF 1486368..1486655 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  IRJ26_RS07820 ssbA 1486696..1487214 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  IRJ26_RS07825 rpsR 1487258..1487497 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  IRJ26_RS07830 xth 1487562..1488320 (+) 759 WP_003243194.1 exodeoxyribonuclease III -
  IRJ26_RS07835 ccpB 1488379..1489314 (+) 936 WP_003243573.1 transcriptional regulator CcpB -
  IRJ26_RS07840 yyaH 1489370..1489750 (+) 381 WP_003244460.1 VOC family protein -
  IRJ26_RS07845 maa 1489768..1490322 (+) 555 WP_003242928.1 sugar O-acetyltransferase -
  IRJ26_RS07850 yyaJ 1490356..1491711 (-) 1356 WP_003243011.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=499303 IRJ26_RS07820 WP_003219228.1 1486696..1487214(+) (ssbA) [Bacillus subtilis strain N1108-5at]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=499303 IRJ26_RS07820 WP_003219228.1 1486696..1487214(+) (ssbA) [Bacillus subtilis strain N1108-5at]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378