Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IRJ24_RS05550 Genome accession   NZ_CP064093
Coordinates   1070414..1070932 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain N1282-4at     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1065414..1075932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS05530 yyzM 1066488..1066694 (+) 207 WP_003226838.1 DUF951 family protein -
  IRJ24_RS05535 yyaE 1066745..1068748 (+) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  IRJ24_RS05540 ychF 1068875..1069975 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  IRJ24_RS05545 rpsF 1070086..1070373 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  IRJ24_RS05550 ssbA 1070414..1070932 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  IRJ24_RS05555 rpsR 1070976..1071215 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  IRJ24_RS05560 xth 1071280..1072038 (+) 759 WP_003243194.1 exodeoxyribonuclease III -
  IRJ24_RS05565 ccpB 1072097..1073032 (+) 936 WP_003243573.1 transcriptional regulator CcpB -
  IRJ24_RS05570 yyaH 1073088..1073468 (+) 381 WP_003244460.1 VOC family protein -
  IRJ24_RS05575 maa 1073486..1074040 (+) 555 WP_003242928.1 sugar O-acetyltransferase -
  IRJ24_RS05580 yyaJ 1074074..1075429 (-) 1356 WP_003243011.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=499203 IRJ24_RS05550 WP_003219228.1 1070414..1070932(+) (ssbA) [Bacillus subtilis strain N1282-4at]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=499203 IRJ24_RS05550 WP_003219228.1 1070414..1070932(+) (ssbA) [Bacillus subtilis strain N1282-4at]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378