Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IRJ22_RS16820 Genome accession   NZ_CP064092
Coordinates   3250096..3250608 (-) Length   170 a.a.
NCBI ID   WP_003178024.1    Uniprot ID   A0A6I1MGI1
Organism   Bacillus licheniformis strain C5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3245096..3255608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS16790 - 3245484..3245615 (-) 132 WP_229098623.1 hypothetical protein -
  IRJ22_RS16795 - 3245782..3246264 (+) 483 WP_003178010.1 spore coat protein -
  IRJ22_RS16800 - 3246307..3246726 (-) 420 WP_003178013.1 universal stress protein -
  IRJ22_RS16805 - 3246744..3248210 (-) 1467 WP_003178015.1 SulP family inorganic anion transporter -
  IRJ22_RS16810 - 3248426..3249727 (+) 1302 WP_009330030.1 MFS transporter -
  IRJ22_RS16815 rpsR 3249805..3250044 (-) 240 WP_003178022.1 30S ribosomal protein S18 -
  IRJ22_RS16820 ssbA 3250096..3250608 (-) 513 WP_003178024.1 single-stranded DNA-binding protein SsbA Machinery gene
  IRJ22_RS16825 rpsF 3250655..3250942 (-) 288 WP_003178026.1 30S ribosomal protein S6 -
  IRJ22_RS16830 ychF 3251056..3252156 (-) 1101 WP_003178027.1 redox-regulated ATPase YchF -
  IRJ22_RS16835 - 3252335..3252541 (-) 207 WP_011201785.1 DUF951 domain-containing protein -
  IRJ22_RS16840 - 3252629..3253642 (-) 1014 WP_003178030.1 hypothetical protein -
  IRJ22_RS16845 yyaC 3253946..3254563 (+) 618 WP_003178032.1 spore protease YyaC -
  IRJ22_RS16850 - 3254600..3255448 (-) 849 WP_003178034.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18373.01 Da        Isoelectric Point: 4.9367

>NTDB_id=499171 IRJ22_RS16820 WP_003178024.1 3250096..3250608(-) (ssbA) [Bacillus licheniformis strain C5]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQHFGGGQNEPAPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=499171 IRJ22_RS16820 WP_003178024.1 3250096..3250608(-) (ssbA) [Bacillus licheniformis strain C5]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCTAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAACGTTGCAAATTTCCTTAAAAAAGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATCAGCAGGGACAGCGTGTATACGTCACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAACACTTTGGCGGCGGACAAAATGAACCGGCTCCAT
TCGGCGGCAGTCAAAACAATCAGAATCGCAATCAAGGCAACAGCTTCAATGACGATCCATTCGCAAATGATGGAAAGCCG
ATTGACATCTCTGATGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MGI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.302

100

0.853
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.382