Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IRJ22_RS04770 Genome accession   NZ_CP064092
Coordinates   921933..923183 (+) Length   416 a.a.
NCBI ID   WP_095240074.1    Uniprot ID   -
Organism   Bacillus licheniformis strain C5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 916933..928183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS04745 ymfI 918247..918978 (+) 732 WP_003181914.1 elongation factor P 5-aminopentanone reductase -
  IRJ22_RS04750 - 919049..919306 (+) 258 WP_003181915.1 DUF3243 domain-containing protein -
  IRJ22_RS04755 - 919554..920345 (+) 792 WP_003181917.1 YmfK family protein -
  IRJ22_RS04760 - 920363..921265 (+) 903 WP_003181919.1 helix-turn-helix domain-containing protein -
  IRJ22_RS04765 pgsA 921332..921913 (+) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IRJ22_RS04770 cinA 921933..923183 (+) 1251 WP_095240074.1 competence/damage-inducible protein A Machinery gene
  IRJ22_RS04775 recA 923351..924397 (+) 1047 WP_003181926.1 recombinase RecA Machinery gene
  IRJ22_RS04780 rny 924738..926297 (+) 1560 WP_003181928.1 ribonuclease Y -
  IRJ22_RS04785 - 926384..927181 (+) 798 WP_003181930.1 TIGR00282 family metallophosphoesterase -
  IRJ22_RS04790 spoVS 927383..927643 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45687.95 Da        Isoelectric Point: 4.9243

>NTDB_id=499131 IRJ22_RS04770 WP_095240074.1 921933..923183(+) (cinA) [Bacillus licheniformis strain C5]
MKLERKAEIIAVGSELLLGQIVNTNAQFISRHLAEIGINVFYHTAVGDNPERLKQVIQTAQQRSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLKLDDEAFESIQDYFKKTNREMSPNNRKQALILEGSDVLPNRFGMAPGMLLEHESRFYMLLPGPPKEL
EPMFENEAKPLILEKLGSREKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPEETNRLL
KETEDRILERVGEFFYGYDDTSLAEELAKACQSKGMTLAAAESFTGGLFSSWLTEMSGASEYFKGGAVCYTNELKVSAAG
VSEDTLQRYGAVSAQCAKELAAGIRVKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVKDQAEEAFEFQFAGSRSAVRK
RSAKYGCHLLLKMMEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=499131 IRJ22_RS04770 WP_095240074.1 921933..923183(+) (cinA) [Bacillus licheniformis strain C5]
ATGAAGTTGGAAAGAAAAGCGGAAATTATCGCTGTCGGCTCTGAGCTTCTGCTCGGACAAATCGTTAATACAAATGCTCA
GTTTATCAGCAGGCATTTGGCCGAAATCGGCATTAACGTCTTTTATCACACGGCGGTGGGAGACAATCCGGAGCGCCTTA
AACAAGTCATTCAGACAGCGCAGCAAAGGTCTGACTTCATCATTTTTTCGGGAGGCCTCGGACCGACGAAAGACGATCTG
ACAAAAGAAACGATCGCCGAAGTTGTCGGGCGCCCTCTTAAGCTCGACGATGAAGCCTTCGAATCGATTCAGGATTACTT
CAAAAAAACGAACCGGGAGATGTCGCCGAACAACCGCAAACAGGCGCTGATCCTCGAAGGATCCGATGTTCTGCCGAACC
GCTTCGGGATGGCTCCGGGAATGCTGCTTGAGCATGAATCGCGCTTTTATATGCTTCTGCCGGGACCTCCGAAAGAGCTG
GAGCCGATGTTTGAAAACGAAGCGAAGCCGCTGATTTTGGAAAAGCTCGGCTCGAGGGAAAAGATCGTGTCAAGGGTGCT
GCGCTTCTTCGGCATCGGTGAATCCCAGCTTGAAACCGATTTGGAAGATCTCATCGATGCGCAGACTAATCCGACAATCG
CTCCGCTTGCGGCAGACGGGGAAGTCACGCTCAGGCTTACGGCAAAGCATGCGGATCCGGAGGAGACAAACCGCTTGTTA
AAAGAAACGGAAGACCGCATTTTGGAGCGGGTCGGAGAATTCTTTTACGGGTATGATGATACATCCCTCGCAGAAGAGCT
TGCGAAAGCATGCCAGAGCAAGGGTATGACTCTGGCTGCTGCGGAAAGCTTTACAGGCGGGCTTTTTTCCAGCTGGCTGA
CGGAAATGAGCGGCGCTTCCGAATATTTCAAAGGCGGCGCCGTCTGCTACACAAACGAATTGAAAGTGTCAGCGGCCGGC
GTTTCGGAAGACACGCTGCAGCGCTATGGTGCGGTCAGCGCGCAATGCGCTAAAGAGCTCGCCGCAGGCATCAGAGTCAA
GACAGGAAGCGATATCGGCATCAGCTTCACTGGAGTAGCCGGGCCGAATACGCAAGAAGGCCATCCGGCTGGAAAGGTGT
TTATCGGCATCTCCGTGAAGGACCAGGCTGAGGAAGCGTTCGAATTTCAGTTCGCCGGATCCAGGTCTGCGGTGCGGAAG
CGTTCTGCCAAATACGGCTGCCATCTGTTGCTGAAAATGATGGAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

76.442

100

0.764
  cinA Streptococcus pneumoniae TIGR4

47.733

100

0.481
  cinA Streptococcus mitis SK321

47.255

100

0.476
  cinA Streptococcus pneumoniae R6

47.255

100

0.476
  cinA Streptococcus pneumoniae Rx1

47.255

100

0.476
  cinA Streptococcus mitis NCTC 12261

47.255

100

0.476
  cinA Streptococcus pneumoniae D39

47.017

100

0.474
  cinA Streptococcus mutans UA159

46.829

98.558

0.462
  cinA Streptococcus suis isolate S10

41.414

95.192

0.394