Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   IRB21_RS01605 Genome accession   NZ_CP064089
Coordinates   321500..322612 (+) Length   370 a.a.
NCBI ID   WP_017368464.1    Uniprot ID   -
Organism   Bacillus altitudinis strain N435-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 316500..327612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS01580 rnpA 317248..317610 (-) 363 WP_081114296.1 ribonuclease P protein component -
  IRB21_RS01585 rpmH 317689..317823 (-) 135 WP_008360908.1 50S ribosomal protein L34 -
  IRB21_RS01590 dnaA 318444..319784 (+) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  IRB21_RS01595 dnaN 319981..321117 (+) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  IRB21_RS01600 yaaA 321268..321483 (+) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  IRB21_RS01605 recF 321500..322612 (+) 1113 WP_017368464.1 DNA replication/repair protein RecF Machinery gene
  IRB21_RS01610 - 322630..322875 (+) 246 WP_008347601.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  IRB21_RS01615 gyrB 322933..324849 (+) 1917 WP_026050185.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  IRB21_RS01620 gyrA 325083..327578 (+) 2496 WP_035390155.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42604.68 Da        Isoelectric Point: 7.1297

>NTDB_id=498934 IRB21_RS01605 WP_017368464.1 321500..322612(+) (recF) [Bacillus altitudinis strain N435-3]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQTMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=498934 IRB21_RS01605 WP_017368464.1 321500..322612(+) (recF) [Bacillus altitudinis strain N435-3]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAACGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTTGTCACCACTACGAGTGT
TGAAGGCATCGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832