Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IRB21_RS03540 Genome accession   NZ_CP064089
Coordinates   689116..689544 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain N435-3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 684116..694544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS03510 - 684260..684589 (+) 330 WP_007498247.1 YckD family protein -
  IRB21_RS03515 - 684636..685400 (-) 765 WP_060780746.1 MBL fold metallo-hydrolase -
  IRB21_RS03520 - 685516..685935 (+) 420 WP_008347846.1 Lrp/AsnC family transcriptional regulator -
  IRB21_RS03525 - 685960..686766 (+) 807 WP_025206721.1 AAC(3) family N-acetyltransferase -
  IRB21_RS03530 comJ 686768..687154 (-) 387 WP_081114847.1 competence protein ComJ -
  IRB21_RS03535 - 687292..688989 (-) 1698 WP_242731524.1 methyl-accepting chemotaxis protein -
  IRB21_RS03540 nucA/comI 689116..689544 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IRB21_RS03545 - 689911..691980 (+) 2070 WP_242731526.1 hydantoinase/oxoprolinase family protein -
  IRB21_RS03550 - 691970..693955 (+) 1986 WP_242731528.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=498939 IRB21_RS03540 WP_007498233.1 689116..689544(-) (nucA/comI) [Bacillus altitudinis strain N435-3]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=498939 IRB21_RS03540 WP_007498233.1 689116..689544(-) (nucA/comI) [Bacillus altitudinis strain N435-3]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514