Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRB21_RS01840 Genome accession   NZ_CP064089
Coordinates   365679..365969 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain N435-3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 360679..370969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS01800 - 360712..361041 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  IRB21_RS01805 - 361054..361494 (+) 441 WP_035391564.1 YaaR family protein -
  IRB21_RS01810 holB 361506..362495 (+) 990 WP_007496231.1 DNA polymerase III subunit delta' -
  IRB21_RS01815 - 362498..363325 (+) 828 WP_007496230.1 stage 0 sporulation family protein -
  IRB21_RS01820 yabA 363340..363693 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  IRB21_RS01825 - 363749..364492 (+) 744 WP_039962495.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IRB21_RS01830 - 364479..364778 (+) 300 WP_046342410.1 GIY-YIG nuclease family protein -
  IRB21_RS01835 rsmI 364753..365634 (+) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IRB21_RS01840 abrB 365679..365969 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IRB21_RS01845 metG 366489..368489 (+) 2001 WP_008341884.1 methionine--tRNA ligase -
  IRB21_RS01850 - 368571..369338 (+) 768 WP_050826832.1 TatD family hydrolase -
  IRB21_RS01855 - 369583..370785 (+) 1203 WP_242731397.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=498936 IRB21_RS01840 WP_087975202.1 365679..365969(-) (abrB) [Bacillus altitudinis strain N435-3]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=498936 IRB21_RS01840 WP_087975202.1 365679..365969(-) (abrB) [Bacillus altitudinis strain N435-3]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938