Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IR196_RS15275 Genome accession   NZ_CP064063
Coordinates   1195431..1195949 (+) Length   172 a.a.
NCBI ID   WP_029924876.1    Uniprot ID   A0A011VB38
Organism   Brucella anthropi strain PBO     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1190431..1200949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR196_RS15270 (IR196_15270) uvrA 1191514..1194438 (-) 2925 WP_151576371.1 excinuclease ABC subunit UvrA -
  IR196_RS15275 (IR196_15275) ssb 1195431..1195949 (+) 519 WP_029924876.1 single-stranded DNA-binding protein Machinery gene
  IR196_RS15280 (IR196_15280) arsC 1196066..1196479 (-) 414 WP_151576369.1 arsenate reductase (glutaredoxin) -
  IR196_RS15285 (IR196_15285) phnF 1196547..1197320 (-) 774 WP_166942007.1 phosphonate metabolism transcriptional regulator PhnF -
  IR196_RS15290 (IR196_15290) phnG 1197646..1198062 (+) 417 WP_043061739.1 phosphonate C-P lyase system protein PhnG -
  IR196_RS15295 (IR196_15295) phnH 1198062..1198691 (+) 630 WP_151576367.1 phosphonate C-P lyase system protein PhnH -
  IR196_RS15300 (IR196_15300) - 1198694..1199803 (+) 1110 WP_010660131.1 carbon-phosphorus lyase complex subunit PhnI -
  IR196_RS15305 (IR196_15305) - 1199800..1200693 (+) 894 WP_012092082.1 alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18607.33 Da        Isoelectric Point: 5.3476

>NTDB_id=498919 IR196_RS15275 WP_029924876.1 1195431..1195949(+) (ssb) [Brucella anthropi strain PBO]
MAGSVNKVILVGNLGADPEIRRLNSGDVVANLRIATSESWRDRQSGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEVVLQKFRGELQMLDSRGEGGGEGRSFGGGGGNRNQMSDYSGGGGDFGSSGPSNQGGSSG
GFSRDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=498919 IR196_RS15275 WP_029924876.1 1195431..1195949(+) (ssb) [Brucella anthropi strain PBO]
ATGGCTGGTAGTGTCAATAAAGTCATTCTGGTCGGCAATCTTGGTGCCGATCCGGAAATTCGTCGTCTGAATTCCGGCGA
CGTGGTTGCCAATCTGCGCATTGCAACGTCGGAAAGCTGGCGCGACCGTCAGAGCGGCGAACGCAAGGACCGCACCGAAT
GGCACAGCGTTGTCATCTTCAATGAGAACCTCGCCAAGGTTGCGGAACAATATCTGAAGAAGGGCGCCAAGGTTTACATC
GAAGGCGCGCTCCAGACCCGCAAATGGCAGGATCAGAACGGCAATGACCGTTATTCGACGGAAGTCGTGCTGCAGAAGTT
CCGTGGTGAGCTGCAGATGCTCGATAGCCGTGGTGAAGGCGGCGGTGAAGGCCGTTCGTTCGGCGGCGGTGGCGGCAACC
GTAACCAGATGTCTGATTATTCCGGTGGCGGCGGTGATTTCGGCTCGTCTGGCCCATCCAATCAGGGTGGCAGCAGCGGT
GGCTTCTCGCGCGATCTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A011VB38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.594

100

0.517
  ssb Vibrio cholerae strain A1552

49.714

100

0.506
  ssb Neisseria meningitidis MC58

38.674

100

0.407
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.395