Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   KHS93_RS12910 Genome accession   NZ_CP075547
Coordinates   2665104..2665799 (-) Length   231 a.a.
NCBI ID   WP_003152646.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2660104..2670799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS12880 (KHS93_12880) - 2660119..2660922 (-) 804 WP_003152657.1 M23 family metallopeptidase -
  KHS93_RS12885 (KHS93_12885) minD 2661050..2661853 (-) 804 WP_003152655.1 septum site-determining protein MinD -
  KHS93_RS12890 (KHS93_12890) minC 2661856..2662536 (-) 681 WP_032856922.1 septum site-determining protein MinC -
  KHS93_RS12895 (KHS93_12895) mreD 2662590..2663108 (-) 519 WP_003152650.1 rod shape-determining protein MreD -
  KHS93_RS12900 (KHS93_12900) mreC 2663105..2663968 (-) 864 WP_032856925.1 rod shape-determining protein MreC -
  KHS93_RS12905 (KHS93_12905) mreB 2663999..2665012 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  KHS93_RS12910 (KHS93_12910) ysxA/radC 2665104..2665799 (-) 696 WP_003152646.1 DNA repair protein RadC Machinery gene
  KHS93_RS12915 (KHS93_12915) - 2665831..2666400 (-) 570 WP_014305513.1 Maf family protein -
  KHS93_RS12920 (KHS93_12920) - 2666541..2667542 (-) 1002 WP_003152644.1 SPOR domain-containing protein -
  KHS93_RS12925 (KHS93_12925) comC 2667669..2668421 (-) 753 WP_003152643.1 A24 family peptidase Machinery gene
  KHS93_RS12930 (KHS93_12930) - 2668561..2669853 (-) 1293 WP_069473525.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26094.33 Da        Isoelectric Point: 9.1909

>NTDB_id=498847 KHS93_RS12910 WP_003152646.1 2665104..2665799(-) (ysxA/radC) [Bacillus amyloliquefaciens strain SN16-1]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=498847 KHS93_RS12910 WP_003152646.1 2665104..2665799(-) (ysxA/radC) [Bacillus amyloliquefaciens strain SN16-1]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGAACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCATAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

88.312

100

0.883
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429