Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H9K48_RS01600 Genome accession   NZ_CP064033
Coordinates   336287..336865 (+) Length   192 a.a.
NCBI ID   WP_248387347.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DLM1805     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331287..341865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K48_RS01585 (H9K48_01580) oxyR 331610..332518 (+) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -
  H9K48_RS01590 (H9K48_01585) - 332574..335144 (-) 2571 WP_005480476.1 PBP1A family penicillin-binding protein -
  H9K48_RS01595 (H9K48_01590) pilM 335287..336303 (+) 1017 WP_025793368.1 type IV pilus assembly protein PilM Machinery gene
  H9K48_RS01600 (H9K48_01595) pilN 336287..336865 (+) 579 WP_248387347.1 PilN domain-containing protein Machinery gene
  H9K48_RS01605 (H9K48_01600) pilO 336858..337451 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  H9K48_RS01610 (H9K48_01605) pilP 337441..337956 (+) 516 WP_023585576.1 pilus assembly protein PilP Machinery gene
  H9K48_RS01615 (H9K48_01610) pilQ 337988..339736 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  H9K48_RS01620 (H9K48_01615) aroK 339925..340443 (+) 519 WP_005381319.1 shikimate kinase AroK -
  H9K48_RS01625 (H9K48_01620) aroB 340475..341575 (+) 1101 WP_025499840.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22466.97 Da        Isoelectric Point: 6.9944

>NTDB_id=498541 H9K48_RS01600 WP_248387347.1 336287..336865(+) (pilN) [Vibrio parahaemolyticus strain DLM1805]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSARLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=498541 H9K48_RS01600 WP_248387347.1 336287..336865(+) (pilN) [Vibrio parahaemolyticus strain DLM1805]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGAGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAGGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

82.812

100

0.828
  pilN Vibrio cholerae strain A1552

62.431

94.271

0.589