Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   H9K48_RS01610 Genome accession   NZ_CP064033
Coordinates   337441..337956 (+) Length   171 a.a.
NCBI ID   WP_023585576.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DLM1805     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332441..342956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K48_RS01590 (H9K48_01585) - 332574..335144 (-) 2571 WP_005480476.1 PBP1A family penicillin-binding protein -
  H9K48_RS01595 (H9K48_01590) pilM 335287..336303 (+) 1017 WP_025793368.1 type IV pilus assembly protein PilM Machinery gene
  H9K48_RS01600 (H9K48_01595) pilN 336287..336865 (+) 579 WP_248387347.1 PilN domain-containing protein Machinery gene
  H9K48_RS01605 (H9K48_01600) pilO 336858..337451 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  H9K48_RS01610 (H9K48_01605) pilP 337441..337956 (+) 516 WP_023585576.1 pilus assembly protein PilP Machinery gene
  H9K48_RS01615 (H9K48_01610) pilQ 337988..339736 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  H9K48_RS01620 (H9K48_01615) aroK 339925..340443 (+) 519 WP_005381319.1 shikimate kinase AroK -
  H9K48_RS01625 (H9K48_01620) aroB 340475..341575 (+) 1101 WP_025499840.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18931.11 Da        Isoelectric Point: 10.4654

>NTDB_id=498543 H9K48_RS01610 WP_023585576.1 337441..337956(+) (pilP) [Vibrio parahaemolyticus strain DLM1805]
MRNKSLLMVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=498543 H9K48_RS01610 WP_023585576.1 337441..337956(+) (pilP) [Vibrio parahaemolyticus strain DLM1805]
ATGAGAAATAAATCTTTGCTGATGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.626

100

0.836
  pilP Vibrio cholerae strain A1552

57.558

100

0.579