Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ISN32_RS02880 Genome accession   NZ_CP064003
Coordinates   684791..686179 (-) Length   462 a.a.
NCBI ID   WP_058360092.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. translucens strain XtKm9     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 679791..691179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN32_RS02855 (ISN32_02855) pilA 680921..681337 (+) 417 WP_128809130.1 pilin Machinery gene
  ISN32_RS02860 (ISN32_02860) - 681429..681797 (-) 369 WP_153476696.1 hypothetical protein -
  ISN32_RS02865 (ISN32_02865) pilB 682060..683796 (+) 1737 WP_058360091.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ISN32_RS02870 (ISN32_02870) - 683806..684423 (-) 618 WP_003477095.1 Fic family protein -
  ISN32_RS02875 (ISN32_02875) - 684420..684602 (-) 183 WP_003477093.1 YhfG family protein -
  ISN32_RS02880 (ISN32_02880) pilR 684791..686179 (-) 1389 WP_058360092.1 sigma-54 dependent transcriptional regulator Regulator
  ISN32_RS02885 (ISN32_02885) - 686254..687867 (-) 1614 WP_003477089.1 ATP-binding protein -
  ISN32_RS02890 (ISN32_02890) sucC 688108..689271 (+) 1164 WP_053833739.1 ADP-forming succinate--CoA ligase subunit beta -
  ISN32_RS02895 (ISN32_02895) sucD 689295..690167 (+) 873 WP_009580520.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49859.26 Da        Isoelectric Point: 6.5828

>NTDB_id=498473 ISN32_RS02880 WP_058360092.1 684791..686179(-) (pilR) [Xanthomonas translucens pv. translucens strain XtKm9]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLATAILTRLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEATPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=498473 ISN32_RS02880 WP_058360092.1 684791..686179(-) (pilR) [Xanthomonas translucens pv. translucens strain XtKm9]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGTTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAGCTCGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAATTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGATCGAGGTGCCCACCGATGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCACGGCGATCCTGACACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCCGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCACGCCCGCA
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.527

99.351

0.621
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472