Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IGI29_RS21015 Genome accession   NZ_CP075474
Coordinates   4250177..4250713 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain NT1N28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4245177..4255713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI29_RS20995 soxR 4246905..4247369 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  IGI29_RS21000 soxS 4247455..4247778 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  IGI29_RS21005 pdeC 4247781..4249367 (-) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  IGI29_RS21010 yjcB 4249797..4250078 (+) 282 WP_001295689.1 YjcB family protein -
  IGI29_RS21015 ssb 4250177..4250713 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IGI29_RS21020 uvrA 4250967..4253789 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  IGI29_RS21025 yjbR 4253824..4254180 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  IGI29_RS21030 yjbQ 4254184..4254600 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IGI29_RS21035 aphA 4254711..4255423 (-) 713 Protein_4007 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=498329 IGI29_RS21015 WP_000168305.1 4250177..4250713(-) (ssb) [Escherichia coli strain NT1N28]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=498329 IGI29_RS21015 WP_000168305.1 4250177..4250713(-) (ssb) [Escherichia coli strain NT1N28]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489