Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IGI24_RS21480 Genome accession   NZ_CP075472
Coordinates   4227857..4228393 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain NT1F25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4222857..4233393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI24_RS21460 soxR 4224585..4225049 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  IGI24_RS21465 soxS 4225135..4225458 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  IGI24_RS21470 pdeC 4225461..4227047 (-) 1587 WP_000019544.1 c-di-GMP phosphodiesterase PdeC -
  IGI24_RS21475 yjcB 4227477..4227758 (+) 282 WP_001295689.1 YjcB family protein -
  IGI24_RS21480 ssb 4227857..4228393 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IGI24_RS21485 uvrA 4228647..4231469 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  IGI24_RS21490 yjbR 4231504..4231860 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  IGI24_RS21495 yjbQ 4231864..4232280 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IGI24_RS21500 aphA 4232391..4233104 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=498247 IGI24_RS21480 WP_000168305.1 4227857..4228393(-) (ssb) [Escherichia coli strain NT1F25]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=498247 IGI24_RS21480 WP_000168305.1 4227857..4228393(-) (ssb) [Escherichia coli strain NT1F25]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489