Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IGI31_RS20135 Genome accession   NZ_CP075465
Coordinates   4186228..4186764 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain NT1N34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4181228..4191764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI31_RS20115 soxR 4182956..4183420 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  IGI31_RS20120 soxS 4183506..4183829 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  IGI31_RS20125 pdeC 4183832..4185418 (-) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  IGI31_RS20130 yjcB 4185848..4186129 (+) 282 WP_001295689.1 YjcB family protein -
  IGI31_RS20135 ssb 4186228..4186764 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IGI31_RS20140 uvrA 4187018..4189840 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  IGI31_RS20145 yjbR 4189875..4190231 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  IGI31_RS20150 yjbQ 4190235..4190651 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IGI31_RS20155 aphA 4190762..4191475 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=498090 IGI31_RS20135 WP_000168305.1 4186228..4186764(-) (ssb) [Escherichia coli strain NT1N34]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=498090 IGI31_RS20135 WP_000168305.1 4186228..4186764(-) (ssb) [Escherichia coli strain NT1N34]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489