Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SSUD12_RS08920 Genome accession   NC_017621
Coordinates   1784659..1785153 (-) Length   164 a.a.
NCBI ID   WP_014638587.1    Uniprot ID   G7SHQ7
Organism   Streptococcus suis D12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1779659..1790153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS08905 (SSUD12_1796) - 1782430..1783374 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  SSUD12_RS08910 (SSUD12_1797) - 1783390..1784046 (+) 657 WP_012027735.1 DUF1129 domain-containing protein -
  SSUD12_RS08915 (SSUD12_1798) rpsR 1784387..1784626 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  SSUD12_RS08920 (SSUD12_1799) ssbA 1784659..1785153 (-) 495 WP_014638587.1 single-stranded DNA-binding protein Machinery gene
  SSUD12_RS08925 (SSUD12_1800) rpsF 1785165..1785455 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  SSUD12_RS08930 (SSUD12_1801) - 1785627..1786616 (-) 990 WP_014638588.1 lipoate--protein ligase -
  SSUD12_RS08935 (SSUD12_1802) - 1786700..1788139 (-) 1440 WP_014638589.1 6-phospho-beta-glucosidase -
  SSUD12_RS08940 (SSUD12_1803) - 1788136..1788756 (-) 621 WP_014638590.1 histidine phosphatase family protein -
  SSUD12_RS08945 (SSUD12_1804) - 1788768..1789367 (-) 600 WP_014638591.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18026.77 Da        Isoelectric Point: 4.7294

>NTDB_id=49800 SSUD12_RS08920 WP_014638587.1 1784659..1785153(-) (ssbA) [Streptococcus suis D12]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDSNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=49800 SSUD12_RS08920 WP_014638587.1 1784659..1785153(-) (ssbA) [Streptococcus suis D12]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGATTCCAACTCACCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCGATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SHQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

58.235

100

0.604
  ssb Glaesserella parasuis strain SC1401

32.105

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment