Detailed information NTG0049797

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: HK86_RS03165
• Genome accession: NC_021847
• Coordinates: 651418..652464 (-)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus O1:Kuk str. FDA_R31
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 646418..657464

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK86_RS03135 (M634_03225)	zapB	646587..646829 (+)	243	WP_005481417.1	cell division protein ZapB	-
HK86_RS03140 (M634_03230)	rraA	646934..647446 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
HK86_RS03145 (M634_03235)	-	647523..648440 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
HK86_RS03150 (M634_03240)	hslU	648625..649956 (-)	1332	WP_020840004.1	HslU--HslV peptidase ATPase subunit	-
HK86_RS03155 (M634_03245)	hslV	649980..650531 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
HK86_RS03160 (M634_03250)	ftsN	650696..651241 (-)	546	WP_005481405.1	cell division protein FtsN	-
HK86_RS03165 (M634_03260)	cytR	651418..652464 (-)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
HK86_RS03170 (M634_03265)	priA	652758..654962 (-)	2205	WP_020840006.1	primosomal protein N'	Machinery gene
HK86_RS03175 (M634_03270)	rpmE	655257..655478 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
HK86_RS03180 (M634_03275)	rpsJ	655936..656247 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
HK86_RS03185 (M634_03280)	rplC	656262..656891 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=49797 HK86_RS03165 WP_254894148.1 651418..652464(-) (cytR) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=49797 HK86_RS03165 WP_254894148.1 651418..652464(-) (cytR) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCATTGCGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATTTATCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871