Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SSUD12_RS08170 Genome accession   NC_017621
Coordinates   1642960..1643604 (+) Length   214 a.a.
NCBI ID   WP_014638478.1    Uniprot ID   -
Organism   Streptococcus suis D12     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1637960..1648604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS08145 (SSUD12_1642) - 1638636..1639973 (-) 1338 WP_014638473.1 hemolysin family protein -
  SSUD12_RS08150 (SSUD12_1643) - 1640089..1640868 (+) 780 WP_014638474.1 ABC transporter ATP-binding protein -
  SSUD12_RS08155 (SSUD12_1644) - 1640884..1641438 (-) 555 WP_014638475.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  SSUD12_RS08160 (SSUD12_1645) - 1641448..1641966 (-) 519 WP_014638476.1 TetR/AcrR family transcriptional regulator -
  SSUD12_RS08165 (SSUD12_1646) - 1642088..1642906 (+) 819 WP_014638477.1 cation diffusion facilitator family transporter -
  SSUD12_RS08170 (SSUD12_1647) cclA/cilC 1642960..1643604 (+) 645 WP_014638478.1 prepilin peptidase Machinery gene
  SSUD12_RS08175 (SSUD12_1648) - 1643712..1645172 (+) 1461 WP_014638479.1 nicotinate phosphoribosyltransferase -
  SSUD12_RS08180 (SSUD12_1649) nadE 1645185..1646009 (+) 825 WP_014638480.1 ammonia-dependent NAD(+) synthetase -
  SSUD12_RS08185 (SSUD12_1650) trpB 1646051..1647226 (-) 1176 WP_014638481.1 tryptophan synthase subunit beta -
  SSUD12_RS08190 (SSUD12_1651) tnpA 1647590..1648054 (-) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24233.30 Da        Isoelectric Point: 8.4760

>NTDB_id=49797 SSUD12_RS08170 WP_014638478.1 1642960..1643604(+) (cclA/cilC) [Streptococcus suis D12]
MKTIILFFLGASIGSFLGLVIDRFPEQSIISPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILSLAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=49797 SSUD12_RS08170 WP_014638478.1 1642960..1643604(+) (cclA/cilC) [Streptococcus suis D12]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCAATCGGCTCCTTCTTGGGTCTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCTCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACCTAATACCCATCCTGTCCC
AGCTTTCGACAAAATCTAAATGCCGTTACTGCAAGGCCAAGATACCTTATTGGTATCTTGGATTGGAATTCTTAGCTGGT
CTAGTCGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCAGCTTAGCAGGGCTAGTTTTAACCAT
TTATGACATCAAGCATCAGGAATATCCCTTTGCTGTCTGGCTCGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50

99.065

0.495
  cclA/cilC Streptococcus pneumoniae Rx1

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae D39

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae R6

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae TIGR4

47.642

99.065

0.472
  cclA/cilC Streptococcus mitis NCTC 12261

45.755

99.065

0.453

Multiple sequence alignment