Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIL86_RS19840 Genome accession   NZ_CP075003
Coordinates   3763933..3764562 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 6817     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3758933..3769562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL86_RS19825 (KIL86_19560) helD 3759175..3761229 (-) 2055 WP_001297106.1 DNA helicase IV -
  KIL86_RS19830 (KIL86_19565) yccF 3761352..3761798 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KIL86_RS19835 (KIL86_19570) yccS 3761808..3763970 (+) 2163 WP_000875023.1 YccS family putative transporter -
  KIL86_RS19840 (KIL86_19575) sxy/tfoX 3763933..3764562 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIL86_RS19845 (KIL86_19580) sulA 3764781..3765290 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIL86_RS19850 (KIL86_19585) ompA 3765647..3766687 (+) 1041 WP_000750416.1 porin OmpA -
  KIL86_RS19855 (KIL86_19590) matP 3766762..3767214 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIL86_RS19860 (KIL86_19595) ycbZ 3767400..3769160 (+) 1761 WP_000156528.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=497077 KIL86_RS19840 WP_000839153.1 3763933..3764562(-) (sxy/tfoX) [Escherichia coli strain 6817]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=497077 KIL86_RS19840 WP_000839153.1 3763933..3764562(-) (sxy/tfoX) [Escherichia coli strain 6817]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1