Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IPZ59_RS03265 Genome accession   NZ_CP063779
Coordinates   802589..803047 (+) Length   152 a.a.
NCBI ID   WP_236138454.1    Uniprot ID   -
Organism   Mongoliitalea daihaiensis strain X100-76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 797589..808047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPZ59_RS03245 (IPZ59_03260) - 798404..799975 (-) 1572 WP_236138451.1 Rne/Rng family ribonuclease -
  IPZ59_RS03250 (IPZ59_03265) - 800155..800973 (-) 819 WP_236138452.1 tetratricopeptide repeat protein -
  IPZ59_RS03255 (IPZ59_03270) - 800996..801355 (-) 360 WP_262893061.1 HU family DNA-binding protein -
  IPZ59_RS03260 (IPZ59_03275) mutY 801426..802538 (+) 1113 WP_236138453.1 A/G-specific adenine glycosylase -
  IPZ59_RS03265 (IPZ59_03280) ssb 802589..803047 (+) 459 WP_236138454.1 single-stranded DNA-binding protein Machinery gene
  IPZ59_RS03270 (IPZ59_03285) gldE 803112..804461 (+) 1350 WP_236138455.1 gliding motility-associated protein GldE -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16807.71 Da        Isoelectric Point: 5.0107

>NTDB_id=496758 IPZ59_RS03265 WP_236138454.1 802589..803047(+) (ssb) [Mongoliitalea daihaiensis strain X100-76]
MAGVNKVILVGNLGSDPEVKHLEGDKVVANVSLATTESYKDRSGNRVDNTEWHDLELWDGLAKIAESYLKKGSKIYVEGK
IKTDSWQDEQGNNRKKVRIRVLNMTMLDSRQDGGGTPAQSGGYQQNQPSQARPMQPAPTAPEPLQEDDDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=496758 IPZ59_RS03265 WP_236138454.1 802589..803047(+) (ssb) [Mongoliitalea daihaiensis strain X100-76]
ATGGCAGGAGTAAATAAAGTTATTTTAGTCGGAAATTTAGGTTCTGATCCTGAAGTAAAACATTTAGAAGGTGACAAAGT
CGTCGCTAATGTTAGCTTGGCCACTACCGAAAGTTACAAAGATCGCAGTGGCAATAGAGTTGATAATACGGAGTGGCATG
ATTTGGAACTTTGGGATGGTTTGGCAAAAATCGCTGAATCATATTTAAAAAAAGGAAGTAAAATCTACGTTGAAGGTAAA
ATCAAAACAGATTCATGGCAAGATGAGCAAGGGAATAATCGAAAAAAGGTTCGCATCCGTGTACTCAATATGACCATGCT
GGATTCTAGGCAAGATGGCGGAGGAACCCCTGCCCAATCAGGCGGCTACCAGCAAAACCAGCCTTCTCAAGCAAGGCCTA
TGCAGCCTGCCCCAACGGCTCCAGAACCTTTGCAAGAAGACGATGATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

41.667

100

0.493
  ssb Vibrio cholerae strain A1552

40.341

100

0.467
  ssb Neisseria gonorrhoeae MS11

39.535

100

0.447
  ssb Neisseria meningitidis MC58

38.953

100

0.441