Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INQ40_RS04385 Genome accession   NZ_CP063772
Coordinates   956327..956815 (+) Length   162 a.a.
NCBI ID   WP_193986557.1    Uniprot ID   -
Organism   Lysobacter sp. H21R4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 951327..961815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ40_RS04370 (INQ40_04370) murL 952367..953743 (+) 1377 WP_194341994.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  INQ40_RS04375 (INQ40_04375) murD 953724..955133 (+) 1410 WP_194341995.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  INQ40_RS04380 (INQ40_04380) - 955176..956174 (-) 999 WP_228482114.1 polyprenyl synthetase family protein -
  INQ40_RS04385 (INQ40_04385) ssb 956327..956815 (+) 489 WP_193986557.1 single-stranded DNA-binding protein Machinery gene
  INQ40_RS04390 (INQ40_04390) rfbB 956933..957988 (+) 1056 WP_194341996.1 dTDP-glucose 4,6-dehydratase -
  INQ40_RS04395 (INQ40_04395) rfbA 957985..958881 (+) 897 WP_228482115.1 glucose-1-phosphate thymidylyltransferase RfbA -
  INQ40_RS04400 (INQ40_04400) rfbC 958878..959435 (+) 558 WP_194341997.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  INQ40_RS04405 (INQ40_04405) rfbD 959441..960346 (+) 906 WP_228482116.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17785.86 Da        Isoelectric Point: 5.0857

>NTDB_id=496693 INQ40_RS04385 WP_193986557.1 956327..956815(+) (ssb) [Lysobacter sp. H21R4]
MARGINKVILVGNLGNDPDMKYTQGGMAICTLSLATTSVRKDKDGQQIEKTEWHRVKLFGKLGEIAGEYLKKGRQVYIEG
SIRYDKFTGQDGVEKYFTDIVADEMQMLGGGGGASEGGGRDFDREERTSRPAPRQAAAPRREATPAKSNDFGDDFADDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=496693 INQ40_RS04385 WP_193986557.1 956327..956815(+) (ssb) [Lysobacter sp. H21R4]
ATGGCACGTGGCATCAACAAGGTGATCCTGGTCGGCAATCTCGGCAACGATCCCGACATGAAGTACACCCAGGGCGGCAT
GGCCATCTGCACCCTCTCGTTGGCGACCACCAGCGTGCGCAAGGACAAGGACGGCCAGCAGATCGAGAAGACCGAATGGC
ACCGCGTGAAGCTGTTCGGCAAGCTGGGCGAGATCGCCGGCGAGTACCTGAAAAAGGGCCGCCAGGTCTACATCGAAGGC
TCGATCCGCTACGACAAGTTCACCGGCCAGGACGGCGTGGAGAAGTACTTCACCGACATCGTTGCCGACGAGATGCAGAT
GCTGGGCGGTGGTGGCGGCGCCTCGGAAGGCGGTGGACGCGACTTCGACCGTGAGGAGCGGACCTCGCGTCCCGCGCCCC
GCCAGGCGGCCGCGCCGCGTCGTGAAGCCACGCCGGCCAAATCGAACGACTTCGGCGACGATTTTGCAGACGACGATATC
CCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

47.429

100

0.512
  ssb Neisseria gonorrhoeae MS11

46.857

100

0.506
  ssb Vibrio cholerae strain A1552

45.198

100

0.494
  ssb Glaesserella parasuis strain SC1401

39.247

100

0.451