Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   INQ40_RS03150 Genome accession   NZ_CP063772
Coordinates   702506..703564 (+) Length   352 a.a.
NCBI ID   WP_194341700.1    Uniprot ID   -
Organism   Lysobacter sp. H21R4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 697506..708564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ40_RS03135 (INQ40_03135) - 697711..699003 (+) 1293 WP_194342388.1 citrate synthase -
  INQ40_RS03140 (INQ40_03140) - 699067..699726 (-) 660 WP_194342389.1 hypothetical protein -
  INQ40_RS03145 (INQ40_03145) - 699772..702261 (-) 2490 WP_194341698.1 penicillin-binding protein 1A -
  INQ40_RS03150 (INQ40_03150) pilM 702506..703564 (+) 1059 WP_194341700.1 pilus assembly protein PilM Machinery gene
  INQ40_RS03155 (INQ40_03155) - 703564..704325 (+) 762 WP_194341702.1 PilN domain-containing protein -
  INQ40_RS03160 (INQ40_03160) pilO 704322..704987 (+) 666 WP_194341704.1 type 4a pilus biogenesis protein PilO -
  INQ40_RS03165 (INQ40_03165) - 704987..705541 (+) 555 WP_194035114.1 pilus assembly protein PilP -
  INQ40_RS03170 (INQ40_03170) - 705606..707507 (+) 1902 WP_194342390.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37628.25 Da        Isoelectric Point: 4.5214

>NTDB_id=496692 INQ40_RS03150 WP_194341700.1 702506..703564(+) (pilM) [Lysobacter sp. H21R4]
MGVIKKSQPALVGVDISSTAVKLLQLSRAGNRYRVEHYAVEPLPPNAVVEMNIVEPEAVGEAIKRAMARSGTRAKHAAAA
VSGSAVITKVIPMPAELDGDDLEAQVELEAVNYVPYPIEEVNLDFEVLGPMPGSPESVQVLLAASRSENVEVRASVLELG
GLIPQVMDVEAFAIENAFALIADQLPIPRDGLVALIDAGATMTTLNVIRQGRSIYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPETYETETLDPFKEALVQQVSRLLQFFYAGSEHNRVDQIVLAGGCAAIAGIAPLVEEQLGVPTMVANPLA
HMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=496692 INQ40_RS03150 WP_194341700.1 702506..703564(+) (pilM) [Lysobacter sp. H21R4]
TTGGGCGTCATCAAGAAGAGCCAGCCGGCACTCGTCGGCGTGGATATCAGTTCGACTGCGGTCAAGCTTCTGCAGCTGTC
GCGGGCAGGCAACCGGTATCGCGTGGAGCACTACGCGGTGGAACCGTTGCCGCCCAACGCGGTGGTGGAGATGAACATCG
TGGAACCCGAGGCGGTTGGCGAGGCGATCAAGCGCGCCATGGCGCGCTCGGGCACCCGCGCCAAACACGCCGCAGCAGCA
GTCTCCGGATCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTGGACGGCGATGATCTGGAAGCCCAGGTCGA
GTTGGAAGCGGTCAACTACGTGCCGTACCCGATCGAGGAAGTGAACCTCGACTTCGAAGTGCTCGGGCCGATGCCCGGCA
GCCCGGAGTCGGTGCAGGTGCTGCTGGCCGCCTCGCGCTCGGAGAACGTCGAGGTCCGTGCCTCCGTGCTCGAGCTTGGG
GGGCTCATCCCCCAGGTCATGGACGTGGAAGCGTTCGCGATCGAGAACGCCTTCGCCCTGATTGCCGATCAGCTGCCCAT
CCCGCGCGACGGGCTGGTGGCGCTGATCGACGCCGGCGCGACGATGACCACGCTCAACGTCATCCGCCAGGGCCGCAGCA
TCTACAGCCGCGAGCAGGTCTTCGGCGGCAAACAGCTGACCGACGAGATCATGCGCCGTTACGGCCTGAGCTATGAGGAA
GCCGGTCTGGCGAAGCGTCAGGGCGGACTGCCGGAGACCTACGAGACAGAGACCCTGGATCCGTTCAAGGAGGCCCTGGT
GCAGCAGGTCAGCCGCCTGTTGCAGTTCTTCTATGCCGGTAGCGAGCACAACCGCGTCGACCAGATCGTGTTGGCCGGCG
GCTGCGCGGCGATCGCCGGCATCGCGCCACTGGTCGAGGAGCAGCTGGGCGTGCCGACGATGGTTGCCAACCCGCTCGCC
CACATGACGCTGGGGCCGCGGGTGCAGGCGCATGCGCTGGCTCAGGACGCTCCGGCGTTGATGATCGCGTGCGGCCTGGC
ATTGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.011

98.864

0.514
  comM Acinetobacter nosocomialis M2

51.724

98.864

0.511
  comM Acinetobacter baylyi ADP1

50.287

98.864

0.497
  pilM Legionella pneumophila strain ERS1305867

44.857

99.432

0.446