Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IOD65_RS02000 Genome accession   NZ_CP063769
Coordinates   430388..430975 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter sp. Ac-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 425388..435975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS01975 (IOD65_01975) - 425457..426263 (-) 807 WP_005066880.1 SDR family NAD(P)-dependent oxidoreductase -
  IOD65_RS01980 (IOD65_01980) - 426367..426738 (-) 372 WP_005066882.1 MerR family transcriptional regulator -
  IOD65_RS01985 (IOD65_01985) tenA 426805..427479 (-) 675 WP_005066884.1 thiaminase II -
  IOD65_RS01990 (IOD65_01990) - 427742..428824 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  IOD65_RS01995 (IOD65_01995) - 428972..430336 (+) 1365 WP_005066887.1 MFS transporter -
  IOD65_RS02000 (IOD65_02000) ssb 430388..430975 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  IOD65_RS02005 (IOD65_02005) - 431016..431339 (-) 324 WP_002117414.1 AzlD domain-containing protein -
  IOD65_RS02010 (IOD65_02010) - 431336..432031 (-) 696 WP_005066893.1 AzlC family ABC transporter permease -
  IOD65_RS02015 (IOD65_02015) - 432100..432648 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  IOD65_RS02020 (IOD65_02020) - 432954..434396 (+) 1443 WP_002117418.1 amino acid permease -
  IOD65_RS02025 (IOD65_02025) - 434463..435962 (-) 1500 WP_025469774.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=496643 IOD65_RS02000 WP_005066890.1 430388..430975(+) (ssb) [Acinetobacter sp. Ac-14]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=496643 IOD65_RS02000 WP_005066890.1 430388..430975(+) (ssb) [Acinetobacter sp. Ac-14]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGTTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCTGGTGGTTTTGCGCCTAAAGCACCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385