Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IM712_RS04540 Genome accession   NZ_CP063768
Coordinates   918559..919077 (+) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain KMU01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 913559..924077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS04520 - 914637..914843 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  IM712_RS04525 - 914890..916893 (+) 2004 WP_048367910.1 molybdopterin-dependent oxidoreductase -
  IM712_RS04530 ychF 917020..918120 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  IM712_RS04535 rpsF 918232..918519 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  IM712_RS04540 ssbA 918559..919077 (+) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  IM712_RS04545 rpsR 919121..919360 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  IM712_RS04550 - 919549..920130 (+) 582 WP_077723122.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  IM712_RS04555 - 920127..920654 (+) 528 WP_077723121.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  IM712_RS04560 xth 920681..921439 (+) 759 WP_077723120.1 exodeoxyribonuclease III -
  IM712_RS04565 - 921501..922439 (+) 939 WP_077723119.1 LacI family DNA-binding transcriptional regulator -
  IM712_RS04570 - 922495..922875 (+) 381 WP_004392999.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=496581 IM712_RS04540 WP_004392979.1 918559..919077(+) (ssbA) [Bacillus velezensis strain KMU01]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=496581 IM712_RS04540 WP_004392979.1 918559..919077(+) (ssbA) [Bacillus velezensis strain KMU01]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378