Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   IM698_RS04585 Genome accession   NZ_CP063682
Coordinates   1018083..1018664 (+) Length   193 a.a.
NCBI ID   WP_019822603.1    Uniprot ID   -
Organism   Vibrio splendidus strain ED144     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013083..1023664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM698_RS04565 (IM698_04560) panP 1013380..1015023 (-) 1644 WP_248374621.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  IM698_RS04570 (IM698_04565) - 1015142..1015669 (-) 528 WP_248374622.1 hypothetical protein -
  IM698_RS04575 (IM698_04570) - 1015844..1016749 (-) 906 WP_260810755.1 lysine exporter LysO family protein -
  IM698_RS04580 (IM698_04575) - 1016804..1017724 (-) 921 WP_248374624.1 HDOD domain-containing protein -
  IM698_RS04585 (IM698_04580) tfoX 1018083..1018664 (+) 582 WP_019822603.1 TfoX/Sxy family DNA transformation protein Regulator
  IM698_RS04590 (IM698_04585) - 1018811..1019353 (-) 543 WP_260810756.1 hypothetical protein -
  IM698_RS04595 (IM698_04590) - 1019643..1020140 (-) 498 WP_248374626.1 response regulator -
  IM698_RS04600 (IM698_04595) - 1020133..1022076 (-) 1944 WP_260810757.1 ATP-binding protein -
  IM698_RS04605 (IM698_04600) - 1022260..1023522 (+) 1263 WP_248374628.1 DUF945 family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22202.62 Da        Isoelectric Point: 9.3844

>NTDB_id=496207 IM698_RS04585 WP_019822603.1 1018083..1018664(+) (tfoX) [Vibrio splendidus strain ED144]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEGCLFIRGGKSLDKKLTDLDCEKYRHVKKQTTATVNYYDITD
LFTCEHPELDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVRKAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=496207 IM698_RS04585 WP_019822603.1 1018083..1018664(+) (tfoX) [Vibrio splendidus strain ED144]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAGCATCAAAAACGTTCTATGTTTGGAGGTATCGGCCT
CTTTCAAAATGACGCTATGTTCGCTTTGTTGAGTGAAGGTTGTTTATTCATTAGAGGTGGAAAGTCATTAGATAAAAAAC
TGACGGATCTTGATTGTGAAAAGTATCGTCATGTAAAAAAACAGACAACAGCTACCGTAAACTATTACGACATTACGGAT
CTGTTTACATGTGAACATCCTGAATTGGATAGTATTATTCGTACTTCAATCGATAATTCAATTCAGCAGCGTAGCTTCAA
GAAATCATCAGCTAGCCGTAGATTAAGAGATCTGCCAAACATGCAGCTTACACTAGAGCGCATGGTTAAGAAGGCTGGTG
TGGATGATGTATCAATGTTTATGCAGTTGGGCGCGCCTGAAGTGTTTAATAAGGTTCGCAAAGCGTACGGAAACGATGTT
GACCTAAAACTACTTTGGAAATTTGCGGGCGCAATTGATGGTATTCACTGGAAACTATTACAAGAGCCACGCAAGCAGCA
ATTATTAAAGAGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

74.093

100

0.741
  tfoX Vibrio cholerae strain A1552

74.093

100

0.741
  tfoX Vibrio campbellii strain DS40M4

70.466

100

0.705
  tfoX Vibrio parahaemolyticus RIMD 2210633

70.466

100

0.705
  tfoX Aliivibrio fischeri ES114

57.895

98.446

0.57