Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   INQ43_RS09935 Genome accession   NZ_CP063658
Coordinates   2188576..2189439 (+) Length   287 a.a.
NCBI ID   WP_193984256.1    Uniprot ID   -
Organism   Lysobacter sp. H23M47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2183576..2194439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ43_RS09915 (INQ43_09915) pilB 2183726..2185456 (+) 1731 WP_194036329.1 type IV-A pilus assembly ATPase PilB Machinery gene
  INQ43_RS09920 (INQ43_09920) - 2185553..2185855 (+) 303 WP_228062479.1 helix-turn-helix transcriptional regulator -
  INQ43_RS09925 (INQ43_09925) - 2185852..2187081 (+) 1230 WP_194036331.1 type II toxin-antitoxin system HipA family toxin -
  INQ43_RS09930 (INQ43_09930) pilC 2187303..2188562 (+) 1260 WP_194036332.1 type II secretion system F family protein Machinery gene
  INQ43_RS09935 (INQ43_09935) pilD 2188576..2189439 (+) 864 WP_193984256.1 A24 family peptidase Machinery gene
  INQ43_RS09940 (INQ43_09940) coaE 2189522..2190142 (+) 621 WP_194036333.1 dephospho-CoA kinase -
  INQ43_RS09945 (INQ43_09945) - 2190265..2191257 (-) 993 WP_194036334.1 Nudix family hydrolase -
  INQ43_RS09950 (INQ43_09950) secA 2191312..2194077 (-) 2766 WP_194036335.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31673.57 Da        Isoelectric Point: 8.4751

>NTDB_id=496171 INQ43_RS09935 WP_193984256.1 2188576..2189439(+) (pilD) [Lysobacter sp. H23M47]
MAFLDQNPEIGYPLVAGFGLLLGSFLNVVILRMPRRMEWQWQRDSREILGEPETYDPPPPGIVVERSHCPHCKHQLSWYE
NIPLFSWLALRGRCRSCKARISAQYPLVELLTAVLMVACVARFGFGWQGFGAMVFTCFLIALSGIDLRTQLLPDQLTLPL
MWLGLIAAVDNLYIAAKPAVIGAVVGYLSLWVVWWLFKQITGKEGMGHGDFKLLAAIGAWTGLAGILPTVLLSSLVGAII
GSIWLAAKGRDKATPIPFGPYLAVAGWIIFFWGEQLIGGYMRISGLA

Nucleotide


Download         Length: 864 bp        

>NTDB_id=496171 INQ43_RS09935 WP_193984256.1 2188576..2189439(+) (pilD) [Lysobacter sp. H23M47]
ATGGCATTTCTCGATCAGAACCCCGAAATCGGCTACCCACTGGTCGCCGGTTTCGGCCTGCTGCTGGGCAGTTTCCTCAA
TGTGGTGATCCTGCGCATGCCGCGCCGGATGGAGTGGCAGTGGCAGCGCGACAGCCGCGAGATCCTCGGCGAGCCGGAGA
CCTACGATCCGCCGCCGCCGGGCATCGTGGTGGAACGCTCGCACTGCCCGCACTGCAAGCACCAGCTGTCCTGGTACGAG
AACATCCCGCTGTTCAGCTGGCTGGCCCTGCGCGGGCGCTGTCGCAGCTGCAAGGCGCGCATCTCGGCGCAGTACCCCCT
GGTGGAGCTGCTGACCGCGGTGTTGATGGTCGCTTGCGTCGCCCGCTTCGGCTTCGGCTGGCAGGGCTTCGGGGCAATGG
TGTTCACCTGCTTCCTGATCGCGCTGTCCGGTATCGACCTGCGCACGCAACTGCTGCCTGACCAGTTGACCCTGCCATTG
ATGTGGCTCGGGTTGATCGCGGCCGTCGACAACCTCTACATAGCCGCCAAACCGGCAGTGATCGGCGCCGTCGTCGGCTA
CCTGAGCCTGTGGGTGGTGTGGTGGCTGTTCAAGCAGATCACCGGCAAGGAAGGCATGGGCCACGGCGACTTCAAGCTGC
TGGCCGCGATTGGGGCCTGGACCGGCCTGGCAGGCATCCTGCCGACCGTACTGCTGTCCTCGCTGGTGGGCGCCATCATC
GGCTCGATCTGGCTGGCCGCGAAAGGCCGCGACAAGGCCACGCCGATCCCGTTCGGGCCGTATCTCGCAGTCGCCGGATG
GATCATCTTCTTCTGGGGCGAGCAGTTGATCGGCGGCTATATGCGGATCTCGGGACTGGCCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)

Type IV leader peptidase family (Peptidase_A24)

(133-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

47.917

100

0.481
  pilD Acinetobacter nosocomialis M2

48.582

98.258

0.477
  pilD Vibrio cholerae strain A1552

49.818

95.819

0.477
  pilD Vibrio campbellii strain DS40M4

49.064

93.031

0.456
  pilD Neisseria gonorrhoeae MS11

45.756

94.425

0.432