Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INQ43_RS04475 Genome accession   NZ_CP063658
Coordinates   986684..987172 (+) Length   162 a.a.
NCBI ID   WP_194037229.1    Uniprot ID   A0A7S6URY3
Organism   Lysobacter sp. H23M47     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 981684..992172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ43_RS04460 (INQ43_04460) murL 982741..984117 (+) 1377 WP_194037226.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  INQ43_RS04465 (INQ43_04465) murD 984098..985507 (+) 1410 WP_194037227.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  INQ43_RS04470 (INQ43_04470) - 985534..986532 (-) 999 WP_194037228.1 polyprenyl synthetase family protein -
  INQ43_RS04475 (INQ43_04475) ssb 986684..987172 (+) 489 WP_194037229.1 single-stranded DNA-binding protein Machinery gene
  INQ43_RS04480 (INQ43_04480) rfbB 987283..988338 (+) 1056 WP_194037230.1 dTDP-glucose 4,6-dehydratase -
  INQ43_RS04485 (INQ43_04485) rfbA 988338..989231 (+) 894 WP_194037231.1 glucose-1-phosphate thymidylyltransferase RfbA -
  INQ43_RS04490 (INQ43_04490) rfbC 989228..989785 (+) 558 WP_194037232.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  INQ43_RS04495 (INQ43_04495) rfbD 989791..990696 (+) 906 WP_194037233.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17755.84 Da        Isoelectric Point: 5.0857

>NTDB_id=496162 INQ43_RS04475 WP_194037229.1 986684..987172(+) (ssb) [Lysobacter sp. H23M47]
MARGINKVILVGNLGNDPDMKYTQGGMAICTLSLATTSVRKDKDGQQIEKTEWHRVKLFGKLGEIAGEYLKKGRQVYIEG
SIRYDKFTGQDGVEKYFTDIVADEMQMLGGGGGGAEGGGRDFDREERTSRPAPRQAAAPRREATPAKSNDFGDDFADDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=496162 INQ43_RS04475 WP_194037229.1 986684..987172(+) (ssb) [Lysobacter sp. H23M47]
ATGGCACGTGGCATCAACAAGGTGATCCTGGTCGGCAATCTCGGCAACGATCCCGACATGAAATACACGCAGGGCGGCAT
GGCTATCTGCACCCTGTCGCTGGCAACCACCAGCGTGCGCAAGGACAAGGACGGCCAGCAGATCGAGAAGACCGAATGGC
ACCGCGTGAAGCTGTTCGGCAAGCTTGGCGAGATCGCCGGCGAGTACCTGAAAAAGGGCCGCCAGGTCTATATCGAAGGC
TCGATCCGCTACGACAAGTTCACCGGCCAGGACGGCGTGGAGAAGTACTTCACCGACATCGTCGCCGATGAGATGCAGAT
GCTGGGCGGCGGCGGTGGCGGCGCCGAGGGCGGTGGCCGTGATTTTGACCGCGAGGAGCGGACCTCGCGCCCCGCACCCC
GCCAGGCGGCCGCGCCGCGTCGTGAAGCCACTCCCGCGAAGTCCAACGACTTCGGCGATGATTTCGCGGACGACGATATC
CCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6URY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

47.429

100

0.512
  ssb Neisseria gonorrhoeae MS11

46.857

100

0.506
  ssb Vibrio cholerae strain A1552

45.198

100

0.494
  ssb Glaesserella parasuis strain SC1401

39.888

100

0.438