Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   INQ43_RS03490 Genome accession   NZ_CP063658
Coordinates   783202..784260 (+) Length   352 a.a.
NCBI ID   WP_194035111.1    Uniprot ID   -
Organism   Lysobacter sp. H23M47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 778202..789260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ43_RS03475 (INQ43_03475) - 778360..779652 (+) 1293 WP_194037548.1 citrate synthase -
  INQ43_RS03480 (INQ43_03480) - 779705..780382 (-) 678 WP_194037549.1 hypothetical protein -
  INQ43_RS03485 (INQ43_03485) - 780452..782956 (-) 2505 WP_194037115.1 penicillin-binding protein 1A -
  INQ43_RS03490 (INQ43_03490) pilM 783202..784260 (+) 1059 WP_194035111.1 pilus assembly protein PilM Machinery gene
  INQ43_RS03495 (INQ43_03495) - 784260..785048 (+) 789 WP_194035112.1 PilN domain-containing protein -
  INQ43_RS03500 (INQ43_03500) pilO 785045..785710 (+) 666 WP_194037116.1 type 4a pilus biogenesis protein PilO -
  INQ43_RS03505 (INQ43_03505) - 785710..786264 (+) 555 WP_194035114.1 pilus assembly protein PilP -
  INQ43_RS03510 (INQ43_03510) - 786428..788230 (+) 1803 WP_228062658.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37623.23 Da        Isoelectric Point: 4.5746

>NTDB_id=496161 INQ43_RS03490 WP_194035111.1 783202..784260(+) (pilM) [Lysobacter sp. H23M47]
MGVIKKSQPALVGVDISSTAVKLLQLSRAGNRYRVEHYAVEPLPPNAVVEMNIVEPEAVGEAIKRAMARSGTRAKHAAAA
VSGSAVITKVIPMPAELDGDDLEAQVELEAVNYVPYPIEEVNLDFEVLGPMPGSPESVQVLLAASRSENVEVRASALELG
GLIPQVMDVEAFAIENAFALIADQLPIPRDGLVALIDAGATMTTLNVIRHGRSIYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPETYETETLDPFKEALVQQVSRLLQFFYAGSEHNRVDQIVLAGGCAAIAGIAPLVEEQLGVPTMIANPLA
HMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=496161 INQ43_RS03490 WP_194035111.1 783202..784260(+) (pilM) [Lysobacter sp. H23M47]
TTGGGCGTCATCAAGAAGAGCCAGCCGGCACTCGTCGGCGTGGATATCAGTTCGACTGCGGTCAAGCTTCTGCAGCTGTC
GCGGGCTGGCAACCGGTATCGCGTGGAGCATTACGCGGTGGAGCCGTTGCCGCCCAACGCGGTGGTGGAAATGAACATCG
TGGAACCCGAGGCGGTTGGCGAGGCGATCAAGCGCGCCATGGCCCGCTCGGGCACCCGCGCCAAGCACGCTGCAGCAGCC
GTGTCCGGATCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCGGAGCTGGACGGCGATGACCTGGAAGCCCAGGTCGA
GCTGGAAGCGGTCAACTACGTTCCCTACCCGATCGAGGAAGTGAACCTGGACTTCGAAGTGCTCGGGCCGATGCCCGGCA
GCCCGGAGTCGGTGCAGGTGCTTCTGGCCGCATCGCGCTCGGAGAACGTTGAGGTCCGTGCCTCCGCGCTCGAGCTGGGC
GGGCTTATCCCCCAGGTCATGGACGTGGAAGCGTTCGCGATCGAGAACGCGTTCGCCCTGATCGCCGATCAGCTGCCCAT
CCCGCGCGACGGCCTGGTCGCGCTGATCGATGCGGGAGCCACGATGACCACGCTCAACGTCATCCGCCATGGCCGCAGCA
TCTACAGCCGCGAACAGGTATTCGGCGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTACGGCCTGAGCTATGAGGAA
GCCGGTCTGGCGAAGCGCCAGGGCGGACTGCCGGAAACCTACGAGACGGAAACCCTGGATCCGTTCAAGGAAGCCCTCGT
ACAGCAGGTCAGCCGCCTGCTGCAGTTCTTCTACGCGGGCAGCGAACACAACCGGGTCGACCAGATCGTGCTGGCCGGGG
GCTGCGCGGCCATCGCGGGCATCGCGCCGCTGGTCGAGGAGCAGCTGGGCGTGCCGACGATGATCGCCAACCCGCTGGCA
CACATGACGCTGGGACCACGGGTGCAGGCGCATGCACTCGCGCAGGATGCTCCGGCCCTGATGATCGCGTGCGGGCTGGC
ATTGAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.011

98.864

0.514
  comM Acinetobacter nosocomialis M2

51.724

98.864

0.511
  comM Acinetobacter baylyi ADP1

50.287

98.864

0.497
  pilM Legionella pneumophila strain ERS1305867

44.857

99.432

0.446