Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INQ42_RS04195 Genome accession   NZ_CP063657
Coordinates   924265..924756 (+) Length   163 a.a.
NCBI ID   WP_194035278.1    Uniprot ID   -
Organism   Novilysobacter avium strain H23M41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 919265..929756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ42_RS04180 (INQ42_04180) murL 920321..921697 (+) 1377 WP_194035277.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  INQ42_RS04185 (INQ42_04185) murD 921678..923087 (+) 1410 WP_194035747.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  INQ42_RS04190 (INQ42_04190) - 923114..924112 (-) 999 WP_228064430.1 polyprenyl synthetase family protein -
  INQ42_RS04195 (INQ42_04195) ssb 924265..924756 (+) 492 WP_194035278.1 single-stranded DNA-binding protein Machinery gene
  INQ42_RS04200 (INQ42_04200) rfbB 924873..925928 (+) 1056 WP_194035279.1 dTDP-glucose 4,6-dehydratase -
  INQ42_RS04205 (INQ42_04205) rfbA 925928..926821 (+) 894 WP_194035280.1 glucose-1-phosphate thymidylyltransferase RfbA -
  INQ42_RS04210 (INQ42_04210) rfbC 926818..927375 (+) 558 WP_194035281.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  INQ42_RS04215 (INQ42_04215) rfbD 927381..928286 (+) 906 WP_194035282.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17782.86 Da        Isoelectric Point: 5.0857

>NTDB_id=496142 INQ42_RS04195 WP_194035278.1 924265..924756(+) (ssb) [Novilysobacter avium strain H23M41]
MARGINKVILVGNLGNDPDMKYTQGGMAICTLSLATTSVRKDKDGQQIEKTEWHRVKLFGKLGEIAGEYLKKGRQVYIEG
SIRYDKFTGQDGVEKYFTDIVADEMQMLGGGGGGGAEGGGRDFDREERTSRPAPRQAAAPRREAAPAKSNDFGDDFADDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=496142 INQ42_RS04195 WP_194035278.1 924265..924756(+) (ssb) [Novilysobacter avium strain H23M41]
ATGGCACGTGGCATCAACAAGGTGATCCTGGTCGGCAATCTCGGCAACGATCCCGACATGAAATACACCCAGGGCGGCAT
GGCCATCTGCACCCTGTCGCTGGCGACCACCAGCGTGCGCAAGGACAAGGACGGCCAGCAGATCGAGAAGACCGAATGGC
ACCGCGTGAAGCTGTTCGGCAAGCTGGGCGAAATCGCCGGCGAGTACCTGAAAAAGGGCCGCCAGGTCTATATCGAAGGT
TCGATCCGCTACGACAAGTTCACCGGCCAGGACGGCGTGGAGAAGTACTTCACCGACATCGTCGCCGATGAGATGCAGAT
GCTGGGCGGCGGCGGCGGTGGCGGCGCCGAGGGCGGTGGCCGTGATTTTGACCGCGAGGAGCGGACCTCGCGCCCCGCAC
CCCGCCAGGCCGCCGCGCCGCGCCGTGAAGCCGCGCCAGCGAAGTCCAATGACTTCGGCGATGATTTCGCGGACGACGAT
ATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

46.857

100

0.503
  ssb Neisseria gonorrhoeae MS11

46.286

100

0.497
  ssb Vibrio cholerae strain A1552

45.198

100

0.491
  ssb Glaesserella parasuis strain SC1401

39.785

100

0.454