Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INQ41_RS04425 Genome accession   NZ_CP063656
Coordinates   965497..965985 (+) Length   162 a.a.
NCBI ID   WP_193986557.1    Uniprot ID   -
Organism   Novilysobacter ciconiae strain H21R20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 960497..970985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ41_RS04410 (INQ41_04410) murL 961537..962913 (+) 1377 WP_193986553.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  INQ41_RS04415 (INQ41_04415) murD 962894..964303 (+) 1410 WP_193987214.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  INQ41_RS04420 (INQ41_04420) - 964346..965344 (-) 999 WP_228076701.1 polyprenyl synthetase family protein -
  INQ41_RS04425 (INQ41_04425) ssb 965497..965985 (+) 489 WP_193986557.1 single-stranded DNA-binding protein Machinery gene
  INQ41_RS04430 (INQ41_04430) rfbB 966104..967159 (+) 1056 WP_193986559.1 dTDP-glucose 4,6-dehydratase -
  INQ41_RS04435 (INQ41_04435) rfbA 967159..968052 (+) 894 WP_193986561.1 glucose-1-phosphate thymidylyltransferase RfbA -
  INQ41_RS13215 rfbC 968049..968606 (+) 558 WP_228076703.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  INQ41_RS04440 (INQ41_04440) rfbD 968612..969517 (+) 906 WP_248285355.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17785.86 Da        Isoelectric Point: 5.0857

>NTDB_id=496122 INQ41_RS04425 WP_193986557.1 965497..965985(+) (ssb) [Novilysobacter ciconiae strain H21R20]
MARGINKVILVGNLGNDPDMKYTQGGMAICTLSLATTSVRKDKDGQQIEKTEWHRVKLFGKLGEIAGEYLKKGRQVYIEG
SIRYDKFTGQDGVEKYFTDIVADEMQMLGGGGGASEGGGRDFDREERTSRPAPRQAAAPRREATPAKSNDFGDDFADDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=496122 INQ41_RS04425 WP_193986557.1 965497..965985(+) (ssb) [Novilysobacter ciconiae strain H21R20]
ATGGCACGTGGCATCAACAAGGTGATCCTGGTCGGCAATCTCGGCAACGATCCCGACATGAAGTACACCCAGGGCGGCAT
GGCCATCTGCACCCTCTCGTTGGCGACCACCAGCGTGCGCAAGGACAAGGACGGCCAGCAGATCGAGAAGACCGAATGGC
ACCGCGTGAAGCTGTTCGGCAAGCTGGGCGAAATCGCCGGCGAGTACCTGAAAAAGGGCCGCCAGGTCTATATCGAAGGC
TCAATCCGCTACGACAAGTTCACCGGCCAGGACGGCGTGGAGAAGTACTTCACCGACATCGTCGCCGATGAGATGCAGAT
GCTGGGCGGCGGCGGTGGCGCCTCGGAAGGCGGTGGACGCGACTTCGACCGCGAGGAGCGGACCTCGCGTCCCGCGCCCC
GTCAGGCCGCCGCGCCGCGCCGTGAAGCCACGCCGGCCAAATCGAACGACTTCGGCGACGATTTTGCGGACGACGATATC
CCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

47.429

100

0.512
  ssb Neisseria gonorrhoeae MS11

46.857

100

0.506
  ssb Vibrio cholerae strain A1552

45.198

100

0.494
  ssb Glaesserella parasuis strain SC1401

39.247

100

0.451